Detailed information    

insolico Bioinformatically predicted

Overview

Name   ideA   Type   Regulator
Locus tag   PUN50_RS03530 Genome accession   NZ_CP117988
Coordinates   751088..751765 (-) Length   225 a.a.
NCBI ID   WP_140587199.1    Uniprot ID   A0A501X3F5
Organism   Vibrio campbellii strain 20220413_1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 746088..756765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN50_RS03525 (PUN50_03525) - 750323..750811 (+) 489 WP_140587200.1 hypothetical protein -
  PUN50_RS03530 (PUN50_03530) ideA 751088..751765 (-) 678 WP_140587199.1 endonuclease Regulator
  PUN50_RS03535 (PUN50_03535) - 751874..752476 (-) 603 WP_140587198.1 hypothetical protein -
  PUN50_RS03540 (PUN50_03540) - 752843..753169 (+) 327 WP_140587197.1 plasmid-related protein -
  PUN50_RS03545 (PUN50_03545) - 753185..753604 (+) 420 WP_000795986.1 single-stranded DNA-binding protein -
  PUN50_RS03550 (PUN50_03550) bet 753684..754502 (+) 819 WP_000414662.1 phage recombination protein Bet -
  PUN50_RS03555 (PUN50_03555) - 754585..754728 (+) 144 WP_181161418.1 hypothetical protein -
  PUN50_RS03560 (PUN50_03560) - 754789..755805 (+) 1017 WP_140587196.1 YqaJ viral recombinase family protein -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 26416.59 Da        Isoelectric Point: 8.2322

>NTDB_id=720180 PUN50_RS03530 WP_140587199.1 751088..751765(-) (ideA) [Vibrio campbellii strain 20220413_1]
MNRTNFLITFLIALFTIPAFAEHPTSFSQAKRFAREIYQDNQSTFYCGCSYNNDGAIDAASCGYEPRKQPKRGERLEWEH
VVSAWEIGHQRQCWQNGGRRNCEKNDPEFSKMVSDLHNLVPSVGELNGDRSNFRFGMIPNEPRAYGLCDFEVVFKDRRAE
PPANRQGDIARIYFYMRDQYGLRLSRQQTQLFEAWSRMDPVDEWEIKRNNRINALQGNKNYHIQK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=720180 PUN50_RS03530 WP_140587199.1 751088..751765(-) (ideA) [Vibrio campbellii strain 20220413_1]
ATGAATAGAACTAATTTTCTCATTACCTTCTTAATAGCGTTGTTCACTATCCCTGCATTTGCAGAACACCCAACATCGTT
CAGCCAGGCAAAACGATTTGCCCGAGAAATTTACCAAGACAACCAGAGTACGTTTTACTGTGGATGTAGCTATAACAATG
ATGGTGCGATTGATGCTGCATCTTGCGGATATGAACCAAGGAAGCAACCGAAACGAGGAGAACGCTTAGAGTGGGAGCAC
GTTGTCTCAGCTTGGGAAATTGGCCATCAACGCCAATGCTGGCAAAATGGTGGTCGTCGGAACTGTGAAAAGAATGATCC
TGAGTTTTCTAAAATGGTGTCGGATCTCCATAACCTTGTACCATCTGTAGGAGAACTCAATGGGGATAGATCAAATTTTC
GATTTGGCATGATTCCGAATGAACCAAGAGCCTATGGTCTATGTGATTTCGAAGTTGTTTTCAAAGACCGTCGAGCAGAA
CCACCAGCTAACCGTCAGGGTGATATTGCTAGAATTTATTTCTACATGCGAGATCAATATGGCCTAAGACTAAGCAGGCA
ACAAACTCAGCTATTTGAAGCTTGGTCAAGAATGGACCCTGTTGACGAATGGGAGATTAAGCGAAACAACCGAATTAATG
CCTTACAAGGCAATAAAAACTATCATATACAAAAATAA

Domains

Predicted by InterProScan.

Endonuclease I (Endonuclease_1)

(41-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A501X3F5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ideA Vibrio cholerae O1 str. 2010EL-1786

92.377

99.111

0.916
  dns Vibrio parahaemolyticus RIMD 2210633

52.423

100

0.529
  dns Aliivibrio fischeri ES114

51.316

100

0.52
  dns Vibrio cholerae strain A1552

49.776

99.111

0.493
  dns Campylobacter jejuni RM1221

37.5

99.556

0.373