Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NVV94_RS22705 Genome accession   NZ_CP102951
Coordinates   4883051..4884268 (+) Length   405 a.a.
NCBI ID   WP_258444579.1    Uniprot ID   -
Organism   Pseudomonas sp. LS1212     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4878051..4889268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NVV94_RS22675 (NVV94_22675) - 4878354..4878677 (+) 324 WP_258444577.1 DUF3077 domain-containing protein -
  NVV94_RS22680 (NVV94_22680) - 4878819..4879571 (-) 753 Protein_4466 Fic family protein -
  NVV94_RS22690 (NVV94_22690) - 4880807..4881211 (-) 405 Protein_4468 Fic family protein -
  NVV94_RS22700 (NVV94_22700) comP 4882220..4882633 (-) 414 WP_258444578.1 pilin Machinery gene
  NVV94_RS22705 (NVV94_22705) pilC 4883051..4884268 (+) 1218 WP_258444579.1 type II secretion system F family protein Machinery gene
  NVV94_RS22710 (NVV94_22710) pilD 4884272..4885144 (+) 873 WP_258444580.1 A24 family peptidase Machinery gene
  NVV94_RS22715 (NVV94_22715) coaE 4885141..4885764 (+) 624 WP_258444581.1 dephospho-CoA kinase -
  NVV94_RS22720 (NVV94_22720) yacG 4885761..4885964 (+) 204 WP_258444582.1 DNA gyrase inhibitor YacG -
  NVV94_RS22725 (NVV94_22725) - 4885970..4886668 (-) 699 WP_258444583.1 energy-coupling factor ABC transporter permease -
  NVV94_RS22730 (NVV94_22730) - 4886847..4887197 (+) 351 WP_258444584.1 BON domain-containing protein -
  NVV94_RS22735 (NVV94_22735) - 4887251..4887577 (-) 327 WP_258447791.1 VOC family protein -
  NVV94_RS22740 (NVV94_22740) - 4887619..4887879 (+) 261 WP_258444585.1 hypothetical protein -
  NVV94_RS22745 (NVV94_22745) - 4887938..4888567 (+) 630 WP_258444586.1 DUF1780 domain-containing protein -
  NVV94_RS22750 (NVV94_22750) - 4888642..4888815 (+) 174 WP_258444587.1 DUF3094 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43773.49 Da        Isoelectric Point: 10.2733

>NTDB_id=720181 NVV94_RS22705 WP_258444579.1 4883051..4884268(+) (pilC) [Pseudomonas sp. LS1212]
MATKAAKVSVYAWEGVNNKGAKVSGELSGPNSALIKAQLRKQGVTPSRVRKKATASLSVGRRIKPLDIAVFSRQMATMMK
AGVPLLQSFDIIGEGFDNPKMRTLIGEIKQEVAAGNSLAVALRKKPQYFDALYCNLVDAGEQAGALDTLLDRVATYKEKT
EVLKSRIKKALTYPVLVLLVAIFVSGILLVKVVPQFQSLFAGFGADLPVFTQRVIELSQFMQHAWWLLLGGLISAVLALQ
QGYRRNQRIRDGIDRALLKLPIVGTLLFKSAVARYARTLSTTFAAGVPLVEALGSVAGATGNVVIRDAVQRIRQDVATGM
QLNFSMRASGVFPNLAVQMTAIGEESGALDDMLDKVASHYENEVENMVDNLTSLLEPLIMVVLGVLVGGLVVAMYLPIFK
LGEVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=720181 NVV94_RS22705 WP_258444579.1 4883051..4884268(+) (pilC) [Pseudomonas sp. LS1212]
ATGGCGACAAAAGCGGCGAAGGTCAGCGTTTATGCGTGGGAAGGCGTCAACAACAAAGGCGCGAAAGTCAGCGGGGAGTT
GAGTGGGCCCAATAGTGCACTGATCAAGGCGCAATTGCGCAAACAGGGCGTCACCCCCTCCCGGGTCAGGAAAAAAGCCA
CAGCTTCACTCAGCGTCGGCAGGCGCATCAAACCGTTGGACATCGCCGTGTTCAGTCGGCAGATGGCAACCATGATGAAA
GCCGGTGTGCCATTGCTGCAGTCTTTCGACATCATCGGCGAAGGTTTCGATAATCCGAAGATGCGCACGCTGATCGGCGA
GATCAAGCAGGAGGTCGCCGCCGGCAACAGCCTGGCTGTGGCACTGCGCAAGAAGCCGCAGTATTTCGATGCGCTTTATT
GCAATCTGGTCGATGCCGGCGAGCAGGCCGGCGCCCTCGATACGTTGCTCGATCGGGTGGCGACCTACAAAGAGAAGACC
GAAGTCCTCAAGTCCAGGATCAAAAAGGCCCTGACCTACCCGGTTCTTGTGCTGTTGGTGGCGATCTTCGTATCGGGGAT
TTTGCTGGTCAAGGTGGTGCCGCAGTTCCAGAGCCTGTTCGCCGGTTTTGGCGCGGACCTGCCGGTGTTCACGCAGAGAG
TCATCGAACTGTCGCAGTTCATGCAGCACGCCTGGTGGCTGCTGCTCGGCGGCCTGATCTCGGCGGTATTGGCCCTGCAA
CAGGGTTACCGGCGCAATCAGCGTATTCGTGATGGCATCGACCGGGCCTTGCTGAAGCTGCCAATTGTCGGCACGCTGCT
GTTCAAGTCGGCCGTCGCCCGTTACGCCCGCACCTTGTCCACGACCTTCGCTGCCGGTGTTCCGCTGGTCGAAGCACTGG
GCTCTGTCGCCGGTGCCACCGGCAATGTGGTGATCAGGGACGCGGTCCAGCGCATTCGTCAGGACGTCGCCACCGGCATG
CAGCTCAATTTTTCGATGCGCGCCAGTGGCGTATTCCCCAACCTGGCCGTACAAATGACGGCCATCGGCGAAGAATCCGG
GGCGCTGGACGACATGCTCGACAAGGTTGCCAGTCACTACGAAAACGAGGTCGAAAATATGGTCGATAACCTGACCAGCC
TGCTGGAGCCGCTGATCATGGTCGTACTCGGGGTACTGGTCGGTGGCCTGGTGGTCGCGATGTACCTGCCGATTTTCAAG
CTCGGCGAAGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

67.407

100

0.674
  pilC Acinetobacter baumannii D1279779

57.843

100

0.583
  pilC Acinetobacter baylyi ADP1

57.353

100

0.578
  pilC Legionella pneumophila strain ERS1305867

53.283

97.778

0.521
  pilG Neisseria gonorrhoeae MS11

43.781

99.259

0.435
  pilG Neisseria meningitidis 44/76-A

43.284

99.259

0.43
  pilC Vibrio cholerae strain A1552

42.611

100

0.427
  pilC Vibrio campbellii strain DS40M4

41.032

100

0.412
  pilC Thermus thermophilus HB27

37.75

98.765

0.373