Detailed information NTG0720182

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NVV94_RS22710
• Genome accession: NZ_CP102951
• Coordinates: 4884272..4885144 (+)
• Length: 290 a.a.
• NCBI ID: WP_258444580.1
• Uniprot ID: -
• Organism: Pseudomonas sp. LS1212
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4879272..4890144

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NVV94_RS22690 (NVV94_22690)	-	4880807..4881211 (-)	405	Protein_4468	Fic family protein	-
NVV94_RS22700 (NVV94_22700)	comP	4882220..4882633 (-)	414	WP_258444578.1	pilin	Machinery gene
NVV94_RS22705 (NVV94_22705)	pilC	4883051..4884268 (+)	1218	WP_258444579.1	type II secretion system F family protein	Machinery gene
NVV94_RS22710 (NVV94_22710)	pilD	4884272..4885144 (+)	873	WP_258444580.1	A24 family peptidase	Machinery gene
NVV94_RS22715 (NVV94_22715)	coaE	4885141..4885764 (+)	624	WP_258444581.1	dephospho-CoA kinase	-
NVV94_RS22720 (NVV94_22720)	yacG	4885761..4885964 (+)	204	WP_258444582.1	DNA gyrase inhibitor YacG	-
NVV94_RS22725 (NVV94_22725)	-	4885970..4886668 (-)	699	WP_258444583.1	energy-coupling factor ABC transporter permease	-
NVV94_RS22730 (NVV94_22730)	-	4886847..4887197 (+)	351	WP_258444584.1	BON domain-containing protein	-
NVV94_RS22735 (NVV94_22735)	-	4887251..4887577 (-)	327	WP_258447791.1	VOC family protein	-
NVV94_RS22740 (NVV94_22740)	-	4887619..4887879 (+)	261	WP_258444585.1	hypothetical protein	-
NVV94_RS22745 (NVV94_22745)	-	4887938..4888567 (+)	630	WP_258444586.1	DUF1780 domain-containing protein	-
NVV94_RS22750 (NVV94_22750)	-	4888642..4888815 (+)	174	WP_258444587.1	DUF3094 domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31825.97 Da
• Isoelectric Point: 8.3043

>NTDB_id=720182 NVV94_RS22710 WP_258444580.1 4884272..4885144(+) (pilD) [Pseudomonas sp. LS1212]
MATYLWLADHSLALIFCAALLGLIIGSFLNVVVHRLPKMLVRDWQDQARDILDLPGMPPGPTYNLMLPHSECPHCAHRIR
AWENVPVLSYLCMRGRCSSCKAPISKRYPLVEIACAGLSAFAAWHFGFSGQAAAFMVLSWGLLAMSLIDADHQVIPDVLV
LPLLWLGLIVNAFGLFVPLADAVWGAVAGYLCLWSVYWLFKLITGKDGMGHGDFKLLAMLGAWGGWQIVPLTVLLSSLVG
AVLGLILLRLRNQRGSMPIPFGPYLAIAGWITLLWGGQITTSYLQFTGLR

Nucleotide

• Length: 873 bp

>NTDB_id=720182 NVV94_RS22710 WP_258444580.1 4884272..4885144(+) (pilD) [Pseudomonas sp. LS1212]
ATGGCCACCTACCTGTGGCTGGCCGACCACTCACTGGCCCTTATCTTCTGCGCCGCGCTGCTGGGGCTGATCATCGGCAG
CTTTCTCAATGTTGTCGTTCACCGTTTGCCGAAAATGCTTGTACGCGACTGGCAAGACCAGGCCCGCGACATTCTCGACC
TGCCCGGCATGCCACCCGGTCCGACCTACAACCTCATGCTGCCCCACTCCGAATGCCCCCATTGCGCCCATCGCATACGC
GCCTGGGAGAATGTACCGGTGCTCAGCTACCTGTGCATGCGCGGCCGTTGTTCCAGCTGCAAGGCGCCCATCAGCAAACG
CTATCCGCTGGTCGAAATCGCTTGTGCCGGGTTGAGCGCCTTCGCTGCCTGGCATTTCGGTTTCAGCGGCCAGGCCGCCG
CCTTCATGGTGCTGAGCTGGGGGCTGCTGGCCATGAGCCTGATCGATGCCGACCATCAGGTAATTCCCGATGTGCTGGTG
TTGCCGCTGTTGTGGCTGGGGTTGATCGTCAATGCGTTCGGTTTGTTCGTGCCGCTGGCCGATGCGGTCTGGGGCGCGGT
GGCTGGCTACCTGTGCCTGTGGTCGGTGTATTGGTTGTTCAAGTTGATCACCGGCAAGGACGGCATGGGCCATGGCGACT
TCAAGCTGTTGGCGATGCTCGGGGCCTGGGGCGGTTGGCAGATCGTGCCGTTGACGGTGCTGCTGTCCTCCCTGGTTGGT
GCCGTGCTGGGCCTGATTTTGCTGCGTTTGCGCAATCAACGAGGCAGCATGCCGATCCCCTTTGGGCCTTATCTGGCCAT
TGCAGGCTGGATCACTCTGCTCTGGGGTGGTCAAATAACCACTTCCTATCTGCAGTTCACTGGTTTGCGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.903	92.759	0.5
pilD	Vibrio campbellii strain DS40M4	51.673	92.759	0.479
pilD	Acinetobacter baumannii D1279779	48.754	96.897	0.472
pilD	Acinetobacter nosocomialis M2	49.27	94.483	0.466
pilD	Neisseria gonorrhoeae MS11	48.627	87.931	0.428