Detailed information
Bioinformatically predicted
Overview
| Name | pilA2 | Type | Machinery gene |
| Locus tag | DLM_RS23930 | Genome accession | NZ_AP018823 |
| Coordinates | 4652669..4653097 (+) | Length | 142 a.a. |
| NCBI ID | WP_089082805.1 | Uniprot ID | - |
| Organism | Aquitalea magnusonii strain H3 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4647669..4658097
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DLM_RS21870 (DLM_4359) | proB | 4648273..4649391 (-) | 1119 | WP_089082808.1 | glutamate 5-kinase | - |
| DLM_RS21875 (DLM_4360) | - | 4649468..4651006 (-) | 1539 | WP_089082807.1 | hypothetical protein | - |
| DLM_RS21880 (DLM_4361) | - | 4651131..4652480 (-) | 1350 | WP_089082806.1 | adenosylmethionine--8-amino-7-oxononanoate transaminase | - |
| DLM_RS23930 | pilA2 | 4652669..4653097 (+) | 429 | WP_089082805.1 | pilin | Machinery gene |
| DLM_RS21890 | pilA | 4653119..4653547 (+) | 429 | WP_089083022.1 | pilin | Machinery gene |
| DLM_RS21895 (DLM_4362) | - | 4653606..4655432 (+) | 1827 | WP_089082804.1 | PglL family O-oligosaccharyltransferase | - |
| DLM_RS21900 (DLM_4363) | - | 4655527..4657314 (+) | 1788 | WP_089082803.1 | PglL family O-oligosaccharyltransferase | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 14779.80 Da Isoelectric Point: 6.0745
>NTDB_id=71553 DLM_RS23930 WP_089082805.1 4652669..4653097(+) (pilA2) [Aquitalea magnusonii strain H3]
MRGNNGFTLIELMIVVAIIGILAAIAIPAYQSYTIRAKVSEGLLAADAIKSAMWDSYTTNNSWPSSNASAGISSATAYAT
NYIDSINIVAASSVSQIVVSFNASTVLSGLTVTLTPVISSGSITWLCQSNASSTQYLPSSCR
MRGNNGFTLIELMIVVAIIGILAAIAIPAYQSYTIRAKVSEGLLAADAIKSAMWDSYTTNNSWPSSNASAGISSATAYAT
NYIDSINIVAASSVSQIVVSFNASTVLSGLTVTLTPVISSGSITWLCQSNASSTQYLPSSCR
Nucleotide
Download Length: 429 bp
>NTDB_id=71553 DLM_RS23930 WP_089082805.1 4652669..4653097(+) (pilA2) [Aquitalea magnusonii strain H3]
ATGCGGGGAAATAACGGTTTTACCTTGATTGAATTGATGATCGTCGTGGCCATCATCGGTATTTTGGCAGCGATTGCGAT
ACCGGCGTATCAGAGTTATACCATCAGGGCCAAGGTTTCTGAGGGGCTGCTAGCAGCTGACGCGATCAAGTCTGCGATGT
GGGATAGCTATACGACGAATAATAGTTGGCCAAGTAGTAATGCTTCGGCGGGAATATCTTCCGCAACGGCATATGCCACC
AACTACATCGACAGTATCAATATTGTGGCAGCCTCTTCAGTGAGTCAGATTGTGGTCAGTTTTAATGCCAGTACAGTATT
AAGTGGGCTTACGGTAACGTTGACGCCGGTCATTTCAAGTGGCTCCATCACTTGGTTGTGCCAGTCGAATGCGTCATCGA
CCCAGTATTTACCTTCCAGTTGTCGTTAA
ATGCGGGGAAATAACGGTTTTACCTTGATTGAATTGATGATCGTCGTGGCCATCATCGGTATTTTGGCAGCGATTGCGAT
ACCGGCGTATCAGAGTTATACCATCAGGGCCAAGGTTTCTGAGGGGCTGCTAGCAGCTGACGCGATCAAGTCTGCGATGT
GGGATAGCTATACGACGAATAATAGTTGGCCAAGTAGTAATGCTTCGGCGGGAATATCTTCCGCAACGGCATATGCCACC
AACTACATCGACAGTATCAATATTGTGGCAGCCTCTTCAGTGAGTCAGATTGTGGTCAGTTTTAATGCCAGTACAGTATT
AAGTGGGCTTACGGTAACGTTGACGCCGGTCATTTCAAGTGGCTCCATCACTTGGTTGTGCCAGTCGAATGCGTCATCGA
CCCAGTATTTACCTTCCAGTTGTCGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA2 | Legionella pneumophila strain ERS1305867 |
48.951 |
100 |
0.493 |
| pilA2 | Legionella pneumophila str. Paris |
48.951 |
100 |
0.493 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
35.676 |
100 |
0.465 |
| comP | Acinetobacter baylyi ADP1 |
43.919 |
100 |
0.458 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
38.323 |
100 |
0.451 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
39.355 |
100 |
0.43 |
| pilE | Neisseria gonorrhoeae MS11 |
37.821 |
100 |
0.415 |
| pilA/pilA1 | Eikenella corrodens VA1 |
39.597 |
100 |
0.415 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
34.641 |
100 |
0.373 |
| pilA | Vibrio cholerae strain A1552 |
34.641 |
100 |
0.373 |
| pilA | Vibrio cholerae C6706 |
34.641 |
100 |
0.373 |
| pilA | Pseudomonas aeruginosa PAK |
34.416 |
100 |
0.373 |