Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | LAB08_RS26085 | Genome accession | NZ_AP017423 |
| Coordinates | 5844268..5844669 (-) | Length | 133 a.a. |
| NCBI ID | WP_096515140.1 | Uniprot ID | - |
| Organism | Pseudomonas izuensis strain LAB-08 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5839268..5849669
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LAB08_RS26070 (LAB08_R52170) | - | 5840085..5843036 (+) | 2952 | WP_096515146.1 | DUF748 domain-containing protein | - |
| LAB08_RS26075 (LAB08_R52180) | - | 5843036..5843332 (+) | 297 | WP_096515144.1 | DUF2845 domain-containing protein | - |
| LAB08_RS26080 (LAB08_R52190) | - | 5843600..5843953 (-) | 354 | WP_096515143.1 | BON domain-containing protein | - |
| LAB08_RS26085 (LAB08_R52200) | pilA | 5844268..5844669 (-) | 402 | WP_096515140.1 | pilin | Machinery gene |
| LAB08_RS26090 (LAB08_R52210) | pilB | 5844895..5846595 (+) | 1701 | WP_096515138.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| LAB08_RS26095 (LAB08_R52220) | pilC | 5846598..5847815 (+) | 1218 | WP_096515135.1 | type II secretion system F family protein | Machinery gene |
| LAB08_RS26100 (LAB08_R52230) | pilD | 5847817..5848689 (+) | 873 | WP_096515134.1 | A24 family peptidase | Machinery gene |
| LAB08_RS26105 (LAB08_R52240) | coaE | 5848686..5849309 (+) | 624 | WP_096515132.1 | dephospho-CoA kinase | - |
| LAB08_RS26110 (LAB08_R52250) | yacG | 5849306..5849506 (+) | 201 | WP_096515130.1 | DNA gyrase inhibitor YacG | - |
Sequence
Protein
Download Length: 133 a.a. Molecular weight: 13243.25 Da Isoelectric Point: 8.1036
>NTDB_id=67922 LAB08_RS26085 WP_096515140.1 5844268..5844669(-) (pilA) [Pseudomonas izuensis strain LAB-08]
MNTQKGFTLIELLIVVAIIGILATFAIPAYSKYQARAKVTAGVAELSALKVNYEDAVNSGTAAPAVTAFAPGGDTQNCTL
AAATGTTPGMVCTLKGAPAVISGATVTLSRDATKGWTCATSVAADYAPKGCGG
MNTQKGFTLIELLIVVAIIGILATFAIPAYSKYQARAKVTAGVAELSALKVNYEDAVNSGTAAPAVTAFAPGGDTQNCTL
AAATGTTPGMVCTLKGAPAVISGATVTLSRDATKGWTCATSVAADYAPKGCGG
Nucleotide
Download Length: 402 bp
>NTDB_id=67922 LAB08_RS26085 WP_096515140.1 5844268..5844669(-) (pilA) [Pseudomonas izuensis strain LAB-08]
ATGAACACTCAAAAAGGTTTTACCCTGATCGAATTACTGATCGTCGTGGCGATCATCGGGATTCTCGCGACGTTCGCGAT
ACCGGCCTATTCCAAGTATCAGGCACGGGCGAAGGTGACGGCGGGTGTCGCAGAGCTTTCGGCGCTGAAGGTCAATTATG
AGGATGCGGTCAACTCCGGTACGGCTGCCCCGGCTGTCACTGCATTTGCCCCAGGGGGTGATACACAGAACTGCACTCTT
GCAGCTGCCACCGGCACAACCCCCGGGATGGTTTGCACATTGAAAGGTGCGCCAGCGGTCATTTCAGGTGCGACTGTGAC
GCTGTCTCGTGACGCGACTAAAGGCTGGACCTGTGCCACCAGTGTCGCAGCAGACTATGCGCCCAAAGGCTGCGGCGGCT
AA
ATGAACACTCAAAAAGGTTTTACCCTGATCGAATTACTGATCGTCGTGGCGATCATCGGGATTCTCGCGACGTTCGCGAT
ACCGGCCTATTCCAAGTATCAGGCACGGGCGAAGGTGACGGCGGGTGTCGCAGAGCTTTCGGCGCTGAAGGTCAATTATG
AGGATGCGGTCAACTCCGGTACGGCTGCCCCGGCTGTCACTGCATTTGCCCCAGGGGGTGATACACAGAACTGCACTCTT
GCAGCTGCCACCGGCACAACCCCCGGGATGGTTTGCACATTGAAAGGTGCGCCAGCGGTCATTTCAGGTGCGACTGTGAC
GCTGTCTCGTGACGCGACTAAAGGCTGGACCTGTGCCACCAGTGTCGCAGCAGACTATGCGCCCAAAGGCTGCGGCGGCT
AA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Acinetobacter baumannii strain A118 |
46.429 |
100 |
0.489 |
| pilA | Vibrio cholerae strain A1552 |
41.007 |
100 |
0.429 |
| pilA | Vibrio cholerae C6706 |
41.007 |
100 |
0.429 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
41.007 |
100 |
0.429 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
42.537 |
100 |
0.429 |
| comP | Acinetobacter baylyi ADP1 |
38.095 |
100 |
0.421 |
| pilA | Pseudomonas aeruginosa PAK |
37.162 |
100 |
0.414 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
38.298 |
100 |
0.406 |
| pilA2 | Legionella pneumophila str. Paris |
38.298 |
100 |
0.406 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
43.089 |
92.481 |
0.398 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
36.09 |
100 |
0.361 |