Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LAB08_RS26095 Genome accession   NZ_AP017423
Coordinates   5846598..5847815 (+) Length   405 a.a.
NCBI ID   WP_096515135.1    Uniprot ID   -
Organism   Pseudomonas izuensis strain LAB-08     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5841598..5852815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAB08_RS26075 (LAB08_R52180) - 5843036..5843332 (+) 297 WP_096515144.1 DUF2845 domain-containing protein -
  LAB08_RS26080 (LAB08_R52190) - 5843600..5843953 (-) 354 WP_096515143.1 BON domain-containing protein -
  LAB08_RS26085 (LAB08_R52200) pilA 5844268..5844669 (-) 402 WP_096515140.1 pilin Machinery gene
  LAB08_RS26090 (LAB08_R52210) pilB 5844895..5846595 (+) 1701 WP_096515138.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LAB08_RS26095 (LAB08_R52220) pilC 5846598..5847815 (+) 1218 WP_096515135.1 type II secretion system F family protein Machinery gene
  LAB08_RS26100 (LAB08_R52230) pilD 5847817..5848689 (+) 873 WP_096515134.1 A24 family peptidase Machinery gene
  LAB08_RS26105 (LAB08_R52240) coaE 5848686..5849309 (+) 624 WP_096515132.1 dephospho-CoA kinase -
  LAB08_RS26110 (LAB08_R52250) yacG 5849306..5849506 (+) 201 WP_096515130.1 DNA gyrase inhibitor YacG -
  LAB08_RS26115 (LAB08_R52260) - 5849739..5850293 (+) 555 WP_096515128.1 hypothetical protein -
  LAB08_RS26120 (LAB08_R52270) - 5850350..5850667 (-) 318 WP_096515646.1 cytochrome C oxidase subunit IV family protein -
  LAB08_RS26125 (LAB08_R52280) - 5850681..5851394 (-) 714 WP_096515126.1 heme-copper oxidase subunit III family protein -
  LAB08_RS26130 (LAB08_R52290) - 5851401..5852093 (-) 693 WP_096515123.1 cytochrome c oxidase subunit 3 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44104.98 Da        Isoelectric Point: 10.0034

>NTDB_id=67924 LAB08_RS26095 WP_096515135.1 5846598..5847815(+) (pilC) [Pseudomonas izuensis strain LAB-08]
MAVKAAKISIYAWEGTDRKGTKVTGELSGQNPALIKAQLRKQGINPGKVRKKTVSLFNMGKRIQAQDIALFTRQMATMMK
AGVPLLQSFDIIAEGFDNPAMRTLVDEVKQEVAAGNSFAAALRKKPRYFDELYCNLVDAGEQAGALDTLLERVATYKEKS
ESLKAKIRKAMTYPLVVVCVAMVVTAILLVKVVPQFQSVFEGFGAQLPAFTVMVIGLSRFMQDGWWMMLGALIATILGAR
HAFRTSQGFRDRTDAWLLKLPLVGTLMYKSAVARFARTLSTTFAAGVPLVEALESVAGATGNIVFKRAVLRIKQDVSTGM
QLNFSMRASGIFPNMAIQMTAIGEESGALDAMLDKVAGFYEDEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=67924 LAB08_RS26095 WP_096515135.1 5846598..5847815(+) (pilC) [Pseudomonas izuensis strain LAB-08]
ATGGCGGTCAAAGCAGCGAAAATCAGCATTTACGCCTGGGAAGGCACCGACCGCAAAGGCACGAAAGTCACCGGCGAGTT
AAGCGGGCAGAACCCGGCACTGATCAAGGCGCAACTGCGTAAACAAGGCATCAACCCCGGCAAGGTTCGCAAGAAAACCG
TCTCGCTGTTCAACATGGGCAAGCGCATCCAGGCCCAGGACATCGCCTTGTTCACGCGCCAGATGGCGACCATGATGAAA
GCCGGCGTGCCGCTGTTGCAGTCGTTCGACATTATTGCCGAAGGCTTCGATAACCCGGCCATGCGCACCCTCGTGGACGA
GGTCAAACAGGAAGTCGCGGCAGGCAACAGTTTCGCCGCCGCCCTGCGCAAGAAACCCCGGTATTTCGATGAGCTGTACT
GCAATCTGGTGGATGCCGGTGAGCAGGCCGGCGCCCTGGATACCCTGTTGGAGCGGGTGGCGACCTACAAGGAAAAGAGC
GAAAGCCTCAAGGCCAAGATCAGGAAAGCCATGACCTACCCGCTGGTCGTTGTGTGTGTCGCCATGGTTGTGACCGCGAT
CCTGCTGGTCAAAGTAGTGCCGCAGTTCCAATCGGTGTTCGAAGGGTTTGGCGCCCAATTGCCTGCCTTTACCGTGATGG
TCATTGGCCTGTCGCGTTTCATGCAGGACGGCTGGTGGATGATGCTCGGTGCGCTGATCGCAACGATCCTGGGTGCACGC
CATGCTTTCAGGACGTCACAAGGCTTTCGCGATCGAACCGACGCCTGGCTGCTGAAGCTGCCGCTGGTGGGGACGCTGAT
GTATAAATCGGCCGTGGCTCGTTTTGCCCGCACCCTGTCGACCACCTTCGCCGCCGGTGTCCCCTTGGTGGAAGCCCTGG
AGTCGGTGGCCGGCGCCACCGGTAACATCGTGTTCAAGCGCGCGGTGCTGCGCATCAAGCAGGACGTTTCGACAGGGATG
CAGTTGAACTTTTCCATGCGCGCTTCCGGCATTTTTCCGAACATGGCCATCCAGATGACCGCCATCGGCGAAGAGTCCGG
CGCACTGGACGCCATGCTCGACAAGGTCGCGGGTTTCTATGAAGACGAGGTAGACAATATGGTCGATAACCTCACCAGCC
TGATGGAACCGTTCATCATGGTGGTTTTGGGTGTTATCGTCGGCGGCCTGGTGGTCGCGATGTACTTGCCCATCTTTCAA
CTCGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

71.111

100

0.711
  pilC Acinetobacter baumannii D1279779

58.824

100

0.593
  pilC Acinetobacter baylyi ADP1

58.578

100

0.59
  pilC Legionella pneumophila strain ERS1305867

53.535

97.778

0.523
  pilG Neisseria gonorrhoeae MS11

43.424

99.506

0.432
  pilG Neisseria meningitidis 44/76-A

42.928

99.506

0.427
  pilC Vibrio cholerae strain A1552

41.919

97.778

0.41
  pilC Vibrio campbellii strain DS40M4

40.049

100

0.402
  pilC Thermus thermophilus HB27

38.155

99.012

0.378

Multiple sequence alignment