Detailed information NTG0067925

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LAB08_RS26100
• Genome accession: NZ_AP017423
• Coordinates: 5847817..5848689 (+)
• Length: 290 a.a.
• NCBI ID: WP_096515134.1
• Uniprot ID: -
• Organism: Pseudomonas izuensis strain LAB-08
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5842817..5853689

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LAB08_RS26075 (LAB08_R52180)	-	5843036..5843332 (+)	297	WP_096515144.1	DUF2845 domain-containing protein	-
LAB08_RS26080 (LAB08_R52190)	-	5843600..5843953 (-)	354	WP_096515143.1	BON domain-containing protein	-
LAB08_RS26085 (LAB08_R52200)	pilA	5844268..5844669 (-)	402	WP_096515140.1	pilin	Machinery gene
LAB08_RS26090 (LAB08_R52210)	pilB	5844895..5846595 (+)	1701	WP_096515138.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LAB08_RS26095 (LAB08_R52220)	pilC	5846598..5847815 (+)	1218	WP_096515135.1	type II secretion system F family protein	Machinery gene
LAB08_RS26100 (LAB08_R52230)	pilD	5847817..5848689 (+)	873	WP_096515134.1	A24 family peptidase	Machinery gene
LAB08_RS26105 (LAB08_R52240)	coaE	5848686..5849309 (+)	624	WP_096515132.1	dephospho-CoA kinase	-
LAB08_RS26110 (LAB08_R52250)	yacG	5849306..5849506 (+)	201	WP_096515130.1	DNA gyrase inhibitor YacG	-
LAB08_RS26115 (LAB08_R52260)	-	5849739..5850293 (+)	555	WP_096515128.1	hypothetical protein	-
LAB08_RS26120 (LAB08_R52270)	-	5850350..5850667 (-)	318	WP_096515646.1	cytochrome C oxidase subunit IV family protein	-
LAB08_RS26125 (LAB08_R52280)	-	5850681..5851394 (-)	714	WP_096515126.1	heme-copper oxidase subunit III family protein	-
LAB08_RS26130 (LAB08_R52290)	-	5851401..5852093 (-)	693	WP_096515123.1	cytochrome c oxidase subunit 3	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32325.81 Da
• Isoelectric Point: 8.4947

>NTDB_id=67925 LAB08_RS26100 WP_096515134.1 5847817..5848689(+) (pilD) [Pseudomonas izuensis strain LAB-08]
MPLNEILTHFPLVFVVIAGLMGLLVGSFLNVVIWRLPKMLQREWRVQAHEILGLPGETPQPTYNLLLPPSQCPGCGHRIR
AWENVPVLSFVFLRGRCSACAMPISKRYPLTELACGLLSAFIAWHFGFGWQACMTLLLTWGLLTMSLIDAEHQLLPDMLV
LPLMWLGLIVNSLGLFVPLHDAMWGAIAGYLALWSVFWLFKLITGKDGMGHGDFKLLAMFGAWGGWQILPLTILLSSLVG
AIIGVIYLRLRQAKTSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=67925 LAB08_RS26100 WP_096515134.1 5847817..5848689(+) (pilD) [Pseudomonas izuensis strain LAB-08]
ATGCCCTTGAACGAAATTCTGACCCACTTCCCCCTGGTTTTCGTCGTCATCGCCGGGCTGATGGGCTTGCTGGTCGGCAG
CTTTCTCAACGTGGTGATCTGGCGCCTTCCAAAAATGCTCCAGCGCGAATGGCGCGTACAAGCCCATGAGATCCTCGGGC
TGCCCGGGGAAACGCCGCAGCCCACCTACAACCTGCTGCTGCCCCCCTCCCAGTGCCCAGGCTGCGGCCATCGGATTCGT
GCCTGGGAAAACGTTCCCGTGCTCAGTTTTGTATTTCTGCGTGGGCGCTGCTCGGCCTGTGCCATGCCGATCAGCAAACG
CTATCCGTTGACTGAACTGGCCTGTGGCCTGTTGTCGGCGTTCATTGCCTGGCACTTCGGTTTCGGCTGGCAAGCCTGCA
TGACGCTGCTCCTGACCTGGGGCCTGCTGACCATGAGCCTGATCGACGCCGAGCATCAGCTGCTGCCAGACATGTTGGTG
CTGCCGCTGATGTGGCTGGGGTTGATCGTCAACAGCCTCGGCCTGTTCGTGCCACTGCATGACGCGATGTGGGGCGCCAT
TGCCGGGTACCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGATCACCGGCAAGGACGGCATGGGCCACGGCGACT
TCAAGTTGCTGGCGATGTTTGGCGCCTGGGGCGGCTGGCAGATTCTGCCGTTGACCATCCTGCTCTCATCCCTTGTAGGA
GCCATTATCGGTGTGATTTACCTGCGCCTGCGCCAGGCAAAAACCTCGACACCGATCCCCTTCGGCCCCTATCTGGCGAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.837	97.241	0.514
pilD	Vibrio campbellii strain DS40M4	51.773	97.241	0.503
pilD	Acinetobacter baumannii D1279779	47.97	93.448	0.448
pilD	Acinetobacter nosocomialis M2	47.232	93.448	0.441
pilD	Neisseria gonorrhoeae MS11	48.837	88.966	0.434