Detailed information
Bioinformatically predicted
Overview
| Name | pilA2 | Type | Machinery gene |
| Locus tag | IEQ11_RS25925 | Genome accession | NZ_CP094357 |
| Coordinates | 4767419..4767841 (+) | Length | 140 a.a. |
| NCBI ID | WP_046657784.1 | Uniprot ID | - |
| Organism | Lysobacter capsici strain VKM B-2533 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4762419..4772841
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IEQ11_RS19520 (IEQ11_19520) | - | 4763754..4765379 (+) | 1626 | WP_191822045.1 | sensor histidine kinase | - |
| IEQ11_RS19525 (IEQ11_19525) | pilR | 4765465..4766874 (+) | 1410 | WP_036104561.1 | sigma-54-dependent transcriptional regulator | Regulator |
| IEQ11_RS25925 | pilA2 | 4767419..4767841 (+) | 423 | WP_046657784.1 | pilin | Machinery gene |
| IEQ11_RS19545 (IEQ11_19545) | pilA2 | 4768378..4768791 (+) | 414 | WP_046657785.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| IEQ11_RS19550 (IEQ11_19550) | - | 4768912..4770807 (+) | 1896 | WP_191822046.1 | hypothetical protein | - |
| IEQ11_RS19555 (IEQ11_19555) | - | 4771530..4772690 (-) | 1161 | WP_191822047.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 140 a.a. Molecular weight: 14589.91 Da Isoelectric Point: 8.1053
>NTDB_id=669226 IEQ11_RS25925 WP_046657784.1 4767419..4767841(+) (pilA2) [Lysobacter capsici strain VKM B-2533]
MKKQQGFTLIELMIVIAILGILIAIALPAYQDYTIRTKNVECLNVAASAKLAVSETAQDRGSLAAITSQAMTGYSFAASS
YCASVIITPVTGVITATTQNTGATAPAVFTLTPTAADGRVDWMCRGTGKASQLPAECRTP
MKKQQGFTLIELMIVIAILGILIAIALPAYQDYTIRTKNVECLNVAASAKLAVSETAQDRGSLAAITSQAMTGYSFAASS
YCASVIITPVTGVITATTQNTGATAPAVFTLTPTAADGRVDWMCRGTGKASQLPAECRTP
Nucleotide
Download Length: 423 bp
>NTDB_id=669226 IEQ11_RS25925 WP_046657784.1 4767419..4767841(+) (pilA2) [Lysobacter capsici strain VKM B-2533]
ATGAAGAAGCAGCAAGGCTTTACCCTCATCGAACTGATGATCGTCATCGCGATCCTCGGCATCCTGATCGCCATCGCTCT
GCCGGCGTACCAGGACTACACGATCCGTACCAAGAACGTTGAGTGCCTGAACGTCGCCGCTTCGGCCAAGCTGGCCGTGT
CGGAAACCGCTCAGGACCGTGGCTCGCTCGCCGCCATCACCAGCCAGGCGATGACCGGCTACAGCTTCGCCGCCAGCAGC
TACTGCGCCAGCGTCATCATCACCCCGGTCACTGGCGTGATCACCGCGACCACGCAGAACACCGGCGCTACCGCTCCGGC
CGTGTTCACCCTGACCCCGACCGCTGCTGACGGCCGCGTTGATTGGATGTGCCGTGGTACCGGCAAGGCTTCGCAGCTGC
CGGCCGAATGCCGCACTCCGTAA
ATGAAGAAGCAGCAAGGCTTTACCCTCATCGAACTGATGATCGTCATCGCGATCCTCGGCATCCTGATCGCCATCGCTCT
GCCGGCGTACCAGGACTACACGATCCGTACCAAGAACGTTGAGTGCCTGAACGTCGCCGCTTCGGCCAAGCTGGCCGTGT
CGGAAACCGCTCAGGACCGTGGCTCGCTCGCCGCCATCACCAGCCAGGCGATGACCGGCTACAGCTTCGCCGCCAGCAGC
TACTGCGCCAGCGTCATCATCACCCCGGTCACTGGCGTGATCACCGCGACCACGCAGAACACCGGCGCTACCGCTCCGGC
CGTGTTCACCCTGACCCCGACCGCTGCTGACGGCCGCGTTGATTGGATGTGCCGTGGTACCGGCAAGGCTTCGCAGCTGC
CGGCCGAATGCCGCACTCCGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA2 | Legionella pneumophila str. Paris |
54.676 |
99.286 |
0.543 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
52.174 |
98.571 |
0.514 |
| pilA/pilA1 | Eikenella corrodens VA1 |
41.026 |
100 |
0.457 |
| comP | Acinetobacter baylyi ADP1 |
43.151 |
100 |
0.45 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
38.65 |
100 |
0.45 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
38.75 |
100 |
0.443 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
42.029 |
98.571 |
0.414 |
| pilA | Haemophilus influenzae Rd KW20 |
38.732 |
100 |
0.393 |
| pilA | Acinetobacter baumannii strain A118 |
36.62 |
100 |
0.371 |
| pilA | Haemophilus influenzae 86-028NP |
36.62 |
100 |
0.371 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
41.6 |
89.286 |
0.371 |
| pilA | Pseudomonas aeruginosa PAK |
34.437 |
100 |
0.371 |