Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   IEQ11_RS19525 Genome accession   NZ_CP094357
Coordinates   4765465..4766874 (+) Length   469 a.a.
NCBI ID   WP_036104561.1    Uniprot ID   A0A108UCN7
Organism   Lysobacter capsici strain VKM B-2533     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4760465..4771874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IEQ11_RS19505 (IEQ11_19505) - 4760725..4761081 (-) 357 WP_191822044.1 endonuclease domain-containing protein -
  IEQ11_RS19510 (IEQ11_19510) sucD 4761379..4762254 (-) 876 WP_036104545.1 succinate--CoA ligase subunit alpha -
  IEQ11_RS19515 (IEQ11_19515) sucC 4762267..4763433 (-) 1167 WP_036104548.1 ADP-forming succinate--CoA ligase subunit beta -
  IEQ11_RS19520 (IEQ11_19520) - 4763754..4765379 (+) 1626 WP_191822045.1 sensor histidine kinase -
  IEQ11_RS19525 (IEQ11_19525) pilR 4765465..4766874 (+) 1410 WP_036104561.1 sigma-54-dependent transcriptional regulator Regulator
  IEQ11_RS25925 pilA2 4767419..4767841 (+) 423 WP_046657784.1 pilin Machinery gene
  IEQ11_RS19545 (IEQ11_19545) pilA2 4768378..4768791 (+) 414 WP_046657785.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  IEQ11_RS19550 (IEQ11_19550) - 4768912..4770807 (+) 1896 WP_191822046.1 hypothetical protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 50831.29 Da        Isoelectric Point: 6.8485

>NTDB_id=669221 IEQ11_RS19525 WP_036104561.1 4765465..4766874(+) (pilR) [Lysobacter capsici strain VKM B-2533]
MAETRSALVVDDERDIRELLVMTLGRMGLRCDTASGLGEARSQLLRNSYDLCLTDMRLPDGSGMDLIAEISQKYPNTPVA
MITAFGNVEAAVDALKAGAFDFVAKPVDLAVLRDLVRHALELNDTRRSASEAVGSRLYGESPAMIKLRQTIGKVARSQAP
VYIAGESGVGKELVARTIHSEGGRADGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAADGGTLFLDEVAE
LPLPMQVKLLRAIQEKSIRPVGAQAELVVDVRILSATHKDLAALVADGRFRQDLYYRINVIELRVPPLRERLDDLPGLAS
KILHRLAGNQGRPVPRLGEDALEALRAYGFPGNVRELENILERALALAEGEVLNASDLRLPRLSTQPPPLPAHAVQAGNP
SPQPGAVDPRTLNPRDTATSALPSYIEEIERAAIQQALQENRYNKTRTAAALGITFRALRYKLKKLGID

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=669221 IEQ11_RS19525 WP_036104561.1 4765465..4766874(+) (pilR) [Lysobacter capsici strain VKM B-2533]
ATGGCTGAAACACGTAGTGCATTGGTAGTCGACGACGAGCGCGATATTCGCGAGCTGCTCGTCATGACCTTGGGCCGGAT
GGGCCTGCGTTGCGACACCGCGTCGGGCCTCGGCGAGGCTCGCAGCCAGCTGCTGCGCAACAGTTACGACTTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCTCGGGCATGGACCTGATCGCCGAGATCAGCCAGAAGTATCCGAACACTCCGGTGGCG
ATGATCACCGCCTTCGGCAACGTCGAAGCCGCGGTCGACGCGCTCAAGGCCGGCGCCTTCGATTTCGTCGCCAAGCCCGT
CGACCTGGCGGTGCTGCGCGATCTGGTGCGGCACGCGCTCGAACTCAACGACACCCGCCGCAGCGCCAGCGAAGCGGTGG
GTTCGCGCCTGTACGGCGAGTCGCCGGCGATGATCAAGTTGCGCCAGACCATCGGCAAGGTCGCGCGCAGCCAAGCCCCG
GTGTACATCGCCGGCGAGTCCGGCGTCGGCAAGGAACTGGTCGCGCGCACCATTCATTCCGAAGGCGGCCGCGCAGACGG
TCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCT
TCACCGGCGCCCACGCCGACAAGCCCGGCCTGTTCCAGGCCGCCGACGGCGGCACCTTGTTCCTGGACGAAGTCGCCGAG
CTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGATCCGCCCGGTCGGCGCGCAAGCCGAACT
GGTGGTCGACGTGCGCATCCTCTCGGCGACCCACAAGGACCTCGCCGCGCTGGTCGCCGACGGCCGCTTCCGCCAGGACC
TTTACTACCGCATCAACGTCATCGAGCTGCGCGTGCCGCCGCTGCGCGAGCGGCTCGACGACCTGCCCGGCCTGGCCTCG
AAGATCCTGCACCGGCTCGCCGGCAACCAGGGCCGGCCGGTGCCGCGACTGGGCGAGGACGCGCTCGAAGCCCTGCGCGC
CTACGGCTTCCCGGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGGCGAAGTCCTCA
ACGCCAGCGACCTGCGCCTGCCGCGTCTGTCGACCCAGCCGCCGCCGTTGCCGGCCCACGCGGTCCAGGCCGGTAACCCA
TCGCCGCAGCCCGGCGCCGTCGACCCGCGCACCCTCAACCCGCGCGACACCGCGACCAGCGCCCTGCCCTCGTACATCGA
GGAAATCGAGCGCGCCGCGATCCAGCAGGCGCTGCAGGAAAACCGCTACAACAAGACCCGCACCGCCGCGGCCCTGGGCA
TCACCTTCCGCGCGCTGCGCTACAAGCTCAAGAAGCTCGGGATCGATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(138-303)

Bacterial regulatory protein, Fis family (HTH_8)

(426-466)

Response regulator receiver domain (Response_reg)

(8-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A108UCN7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.741

99.574

0.625
  pilR Acinetobacter baumannii strain A118

48.117

100

0.49

Multiple sequence alignment