Detailed information
Bioinformatically predicted
Overview
| Name | pilA2 | Type | Machinery gene |
| Locus tag | IEQ11_RS19545 | Genome accession | NZ_CP094357 |
| Coordinates | 4768378..4768791 (+) | Length | 137 a.a. |
| NCBI ID | WP_046657785.1 | Uniprot ID | - |
| Organism | Lysobacter capsici strain VKM B-2533 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4763378..4773791
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IEQ11_RS19520 (IEQ11_19520) | - | 4763754..4765379 (+) | 1626 | WP_191822045.1 | sensor histidine kinase | - |
| IEQ11_RS19525 (IEQ11_19525) | pilR | 4765465..4766874 (+) | 1410 | WP_036104561.1 | sigma-54-dependent transcriptional regulator | Regulator |
| IEQ11_RS25925 | pilA2 | 4767419..4767841 (+) | 423 | WP_046657784.1 | pilin | Machinery gene |
| IEQ11_RS19545 (IEQ11_19545) | pilA2 | 4768378..4768791 (+) | 414 | WP_046657785.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| IEQ11_RS19550 (IEQ11_19550) | - | 4768912..4770807 (+) | 1896 | WP_191822046.1 | hypothetical protein | - |
| IEQ11_RS19555 (IEQ11_19555) | - | 4771530..4772690 (-) | 1161 | WP_191822047.1 | hypothetical protein | - |
| IEQ11_RS19560 (IEQ11_19560) | - | 4772687..4773547 (-) | 861 | WP_191822048.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 14272.45 Da Isoelectric Point: 6.1882
>NTDB_id=669222 IEQ11_RS19545 WP_046657785.1 4768378..4768791(+) (pilA2) [Lysobacter capsici strain VKM B-2533]
MKRQLGFTLIELMIVIAIIGILVSIALPAYLDYVTRTKNAECLNVAAGAKLSVSETAQDRGSLSLVTALNTGYSFSASSY
CASITIGNNGVVTAVSSPGAAPSVTFTLRPTESLGRLEWDCNVAAGTNLTVVPAECR
MKRQLGFTLIELMIVIAIIGILVSIALPAYLDYVTRTKNAECLNVAAGAKLSVSETAQDRGSLSLVTALNTGYSFSASSY
CASITIGNNGVVTAVSSPGAAPSVTFTLRPTESLGRLEWDCNVAAGTNLTVVPAECR
Nucleotide
Download Length: 414 bp
>NTDB_id=669222 IEQ11_RS19545 WP_046657785.1 4768378..4768791(+) (pilA2) [Lysobacter capsici strain VKM B-2533]
ATGAAACGGCAACTCGGCTTCACGCTCATTGAGTTGATGATTGTCATCGCGATCATTGGCATTCTGGTCTCGATAGCGCT
CCCAGCTTATCTCGACTATGTAACGCGAACCAAGAATGCTGAATGCCTCAATGTGGCGGCCGGAGCCAAGCTTTCAGTAT
CCGAAACTGCGCAAGACCGCGGCTCTCTCAGTCTGGTCACCGCACTCAACACCGGATATAGCTTCAGCGCTTCCAGTTAC
TGCGCCAGCATCACAATTGGCAACAACGGCGTGGTGACAGCTGTATCTTCGCCGGGTGCGGCCCCTTCGGTGACCTTCAC
CTTACGTCCCACCGAATCCTTAGGGCGCCTGGAGTGGGATTGCAATGTCGCAGCCGGTACCAACCTCACGGTGGTGCCTG
CGGAGTGCCGTTAA
ATGAAACGGCAACTCGGCTTCACGCTCATTGAGTTGATGATTGTCATCGCGATCATTGGCATTCTGGTCTCGATAGCGCT
CCCAGCTTATCTCGACTATGTAACGCGAACCAAGAATGCTGAATGCCTCAATGTGGCGGCCGGAGCCAAGCTTTCAGTAT
CCGAAACTGCGCAAGACCGCGGCTCTCTCAGTCTGGTCACCGCACTCAACACCGGATATAGCTTCAGCGCTTCCAGTTAC
TGCGCCAGCATCACAATTGGCAACAACGGCGTGGTGACAGCTGTATCTTCGCCGGGTGCGGCCCCTTCGGTGACCTTCAC
CTTACGTCCCACCGAATCCTTAGGGCGCCTGGAGTGGGATTGCAATGTCGCAGCCGGTACCAACCTCACGGTGGTGCCTG
CGGAGTGCCGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA2 | Legionella pneumophila str. Paris |
49.275 |
100 |
0.496 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
48.551 |
100 |
0.489 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
38.182 |
100 |
0.46 |
| comP | Acinetobacter baylyi ADP1 |
38.514 |
100 |
0.416 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
36.806 |
100 |
0.387 |
| pilA/pilA1 | Eikenella corrodens VA1 |
37.879 |
96.35 |
0.365 |