Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   MML47_RS05610 Genome accession   NZ_CP092971
Coordinates   1205548..1205961 (+) Length   137 a.a.
NCBI ID   WP_241442745.1    Uniprot ID   -
Organism   Xanthomonas oryzae strain NJ01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1200548..1210961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MML47_RS05590 (MML47_05590) - 1200884..1202218 (+) 1335 WP_053502793.1 HAMP domain-containing sensor histidine kinase -
  MML47_RS05595 (MML47_05595) coaE 1202445..1203050 (-) 606 WP_053502725.1 dephospho-CoA kinase -
  MML47_RS05600 (MML47_05600) - 1203064..1203927 (-) 864 WP_241442744.1 A24 family peptidase -
  MML47_RS05605 (MML47_05605) pilC 1203934..1205193 (-) 1260 WP_131076128.1 type II secretion system F family protein Machinery gene
  MML47_RS05610 (MML47_05610) pilA 1205548..1205961 (+) 414 WP_241442745.1 pilin Machinery gene
  MML47_RS05615 (MML47_05615) - 1206180..1207691 (+) 1512 WP_338423479.1 phosphoethanolamine transferase -
  MML47_RS05620 (MML47_05620) - 1207762..1208331 (+) 570 WP_241443249.1 hypothetical protein -
  MML47_RS05625 (MML47_05625) - 1208301..1209827 (+) 1527 WP_053502734.1 hypothetical protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 14129.37 Da        Isoelectric Point: 8.4866

>NTDB_id=661182 MML47_RS05610 WP_241442745.1 1205548..1205961(+) (pilA) [Xanthomonas oryzae strain NJ01]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTIRSRVSEMAVLASGAKATIGENIANENAINTNACRGVATFNTATTN
TASLACANGIVTVTGTAKASSVILTYTPVLVDAGIKWICSSSSPAKYLPAECRGSGT

Nucleotide


Download         Length: 414 bp        

>NTDB_id=661182 MML47_RS05610 WP_241442745.1 1205548..1205961(+) (pilA) [Xanthomonas oryzae strain NJ01]
ATGAAGAAGCAGCAAGGCTTTACACTTATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCTGCCATCGCGCT
GCCGGCTTATCAGGATTACACCATCCGCTCGCGTGTCTCTGAAATGGCTGTGCTTGCCTCGGGTGCCAAGGCGACGATTG
GTGAGAATATCGCCAATGAGAATGCGATTAATACTAATGCGTGCCGCGGCGTTGCTACGTTTAATACCGCCACGACAAAT
ACTGCTTCCCTGGCGTGTGCCAACGGTATTGTCACTGTCACTGGTACGGCTAAGGCTTCGAGCGTCATTCTGACCTACAC
TCCGGTCCTTGTGGACGCTGGCATCAAGTGGATCTGTTCCTCTTCCAGCCCAGCTAAGTACCTGCCGGCCGAATGCCGCG
GTTCGGGCACCTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-133)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Ralstonia pseudosolanacearum GMI1000

42.945

100

0.511
  pilA2 Legionella pneumophila str. Paris

51.111

98.54

0.504
  comP Acinetobacter baylyi ADP1

46.259

100

0.496
  pilA2 Legionella pneumophila strain ERS1305867

50.37

98.54

0.496
  pilA Vibrio parahaemolyticus RIMD 2210633

44.275

95.62

0.423
  pilE Neisseria gonorrhoeae strain FA1090

37.662

100

0.423
  pilA/pilAI Pseudomonas stutzeri DSM 10701

40.714

100

0.416
  pilA Acinetobacter baumannii strain A118

36.667

100

0.401
  pilE Neisseria gonorrhoeae MS11

35.484

100

0.401
  pilA/pilA1 Eikenella corrodens VA1

35.762

100

0.394
  pilA Pseudomonas aeruginosa PAK

36

100

0.394
  pilA Vibrio cholerae C6706

33.766

100

0.38
  pilA Vibrio cholerae strain A1552

33.766

100

0.38
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

33.766

100

0.38