NTDB

Overview

Name	pilE	Type	Machinery gene
Locus tag	LVJ83_RS13150	Genome accession	NZ_CP091508
Coordinates	2873415..2873846 (+)	Length	143 a.a.
NCBI ID	WP_244785096.1	Uniprot ID	-
Organism	Uruburuella testudinis strain CCUG 63373m
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2868415..2878846

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LVJ83_RS13130 (LVJ83_13130)	dacB	2869473..2870945 (+)	1473	WP_244785092.1	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	-
LVJ83_RS13135 (LVJ83_13135)	grxC	2871147..2871416 (+)	270	WP_244785093.1	glutaredoxin 3	-
LVJ83_RS13140 (LVJ83_13140)	secB	2871481..2871915 (+)	435	WP_244785094.1	protein-export chaperone SecB	-
LVJ83_RS13145 (LVJ83_13145)	-	2872644..2872919 (-)	276	WP_244785095.1	hypothetical protein	-
LVJ83_RS13150 (LVJ83_13150)	pilE	2873415..2873846 (+)	432	WP_244785096.1	pilin	Machinery gene
LVJ83_RS13605	-	2873883..2874359 (+)	477	WP_280515216.1	pilin	-
LVJ83_RS13165 (LVJ83_13165)	rclC	2874501..2875082 (-)	582	WP_244785097.1	reactive chlorine resistance membrane protein RclC	-
LVJ83_RS13170 (LVJ83_13170)	-	2875183..2875524 (-)	342	WP_244785098.1	carboxymuconolactone decarboxylase family protein	-
LVJ83_RS13175 (LVJ83_13175)	-	2875725..2876708 (+)	984	WP_244785099.1	AraC family transcriptional regulator	-
LVJ83_RS13180 (LVJ83_13180)	-	2876755..2876898 (+)	144	WP_244785100.1	hypothetical protein	-
LVJ83_RS13185 (LVJ83_13185)	-	2877115..2878071 (-)	957	WP_244785101.1	L-lactate dehydrogenase	-

Sequence

Protein

Download Length: 143 a.a. Molecular weight: 15305.24 Da Isoelectric Point: 4.3224

                                >NTDB_id=651804 LVJ83_RS13150 WP_244785096.1 2873415..2873846(+) (pilE) [Uruburuella testudinis strain CCUG 63373m]

MKATQKGFTLIELMIVIAIIGILAVIALPAYQDYTARAQVSEAFSLAEGQKAAVTEFFADRGEWPDDNADAGVAAPTDIN

GRYVEQVTIGGEGVITATMRETDTNADIRGRTLTLTPTQQGGSFTWACNGTIDAKFRPASCRE

Nucleotide

Download Length: 432 bp

                                >NTDB_id=651804 LVJ83_RS13150 WP_244785096.1 2873415..2873846(+) (pilE) [Uruburuella testudinis strain CCUG 63373m]

ATGAAAGCAACCCAAAAAGGCTTTACTTTAATCGAGCTGATGATTGTTATTGCCATTATCGGTATTTTGGCTGTCATCGC

TTTGCCGGCTTACCAAGACTACACTGCACGCGCTCAAGTATCTGAAGCCTTCTCTTTGGCTGAAGGCCAAAAAGCAGCCG

TTACCGAATTCTTTGCCGATCGTGGTGAATGGCCGGATGATAATGCAGACGCAGGCGTAGCAGCGCCGACGGATATTAAT

GGCCGTTATGTAGAACAAGTGACGATTGGTGGTGAGGGTGTTATTACTGCAACCATGCGCGAAACAGATACAAATGCCGA

TATCCGAGGCAGAACCTTAACACTTACGCCGACTCAACAAGGCGGCTCCTTTACTTGGGCTTGTAATGGCACCATTGACG

CCAAATTCCGCCCTGCATCTTGCCGCGAGTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-142)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-28)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilE	Neisseria gonorrhoeae MS11	52.174	100	0.587
pilE	Neisseria gonorrhoeae strain FA1090	51.875	100	0.58
pilA2	Legionella pneumophila str. Paris	50.714	97.902	0.497
pilA2	Legionella pneumophila strain ERS1305867	50.714	97.902	0.497
pilA/pilA1	Eikenella corrodens VA1	44.304	100	0.49
pilA	Ralstonia pseudosolanacearum GMI1000	41.916	100	0.49
pilE	Neisseria elongata subsp. glycolytica ATCC 29315	36.702	100	0.483
comP	Acinetobacter baylyi ADP1	43.537	100	0.448
pilA/pilAI	Pseudomonas stutzeri DSM 10701	40.559	100	0.406
pilA	Pseudomonas aeruginosa PAK	37.255	100	0.399
pilA	Acinetobacter baumannii strain A118	39.286	97.902	0.385
pilA	Haemophilus influenzae 86-028NP	37.956	95.804	0.364
pilA	Haemophilus influenzae Rd KW20	36.879	98.601	0.364
pilA/pilAII	Pseudomonas stutzeri DSM 10701	35.616	100	0.364

Detailed information NTG0651804