Detailed information NTG0633648

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: N6H16_RS05315
• Genome accession: NZ_CP104851
• Coordinates: 1085729..1086721 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain GYX208DH4E-2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1080729..1091721

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N6H16_RS05285 (N6H16_05260)	ispD	1080790..1081500 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
N6H16_RS05290 (N6H16_05265)	ispF	1081500..1081979 (+)	480	WP_001374730.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
N6H16_RS05295 (N6H16_05270)	truD	1081976..1083025 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
N6H16_RS05300 (N6H16_05275)	surE	1083006..1083767 (+)	762	WP_001374723.1	5'/3'-nucleotidase SurE	-
N6H16_RS05305 (N6H16_05280)	pcm	1083761..1084387 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
N6H16_RS05310 (N6H16_05285)	nlpD	1084572..1085666 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
N6H16_RS05315 (N6H16_05290)	rpoS	1085729..1086721 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
N6H16_RS05320 (N6H16_05295)	ygbN	1086815..1088179 (-)	1365	WP_000104456.1	GntP family transporter	-
N6H16_RS05325 (N6H16_05300)	ygbM	1088268..1089044 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
N6H16_RS05330 (N6H16_05305)	ygbL	1089049..1089687 (-)	639	WP_001278994.1	aldolase	-
N6H16_RS05335 (N6H16_05310)	otnK	1089684..1090946 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=633648 N6H16_RS05315 WP_000081550.1 1085729..1086721(+) (rpoS) [Escherichia coli strain GYX208DH4E-2]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=633648 N6H16_RS05315 WP_000081550.1 1085729..1086721(+) (rpoS) [Escherichia coli strain GYX208DH4E-2]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715