Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   N597_RS00245 Genome accession   NC_022582
Coordinates   48660..48977 (+) Length   105 a.a.
NCBI ID   WP_023022076.1    Uniprot ID   -
Organism   Streptococcus ilei     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 43660..53977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N597_RS00225 (N597_00235) - 44965..46068 (+) 1104 WP_006595140.1 glycosyl hydrolase family 8 -
  N597_RS00230 (N597_00240) - 46275..46652 (+) 378 WP_006595139.1 DUF1033 family protein -
  N597_RS00235 (N597_00245) comYA 46758..47699 (+) 942 WP_006597118.1 competence type IV pilus ATPase ComGA Machinery gene
  N597_RS00240 (N597_00250) comYB 47641..48663 (+) 1023 WP_023022075.1 competence type IV pilus assembly protein ComGB Machinery gene
  N597_RS00245 (N597_00255) comYC 48660..48977 (+) 318 WP_023022076.1 competence type IV pilus major pilin ComGC Machinery gene
  N597_RS00250 (N597_00260) comGD/cglD 48946..49371 (+) 426 WP_042507426.1 competence type IV pilus minor pilin ComGD Machinery gene
  N597_RS00255 (N597_00265) comGE 49337..49630 (+) 294 WP_006595134.1 competence type IV pilus minor pilin ComGE -
  N597_RS00260 (N597_00270) comGF/cglF 49614..50066 (+) 453 WP_040803180.1 competence type IV pilus minor pilin ComGF Machinery gene
  N597_RS00265 (N597_00275) comGG 50032..50478 (+) 447 WP_006595132.1 competence type IV pilus minor pilin ComGG -
  N597_RS00270 (N597_00280) comYH 50510..51463 (+) 954 WP_023022079.1 class I SAM-dependent methyltransferase Machinery gene
  N597_RS00275 (N597_00285) - 51512..52708 (+) 1197 WP_023022080.1 acetate kinase -
  N597_RS00280 (N597_00290) - 52860..53534 (+) 675 WP_224781595.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11703.65 Da        Isoelectric Point: 9.8248

>NTDB_id=62875 N597_RS00245 WP_023022076.1 48660..48977(+) (comYC) [Streptococcus ilei]
MKSLRTLKVKAFTLIEMLVVLLIISVLLLLFVPNLTKQKDSVTDTGNRAVVKVVESQAELYELNHQNEKASLSKLVAEGQ
ITQKQAEAYRAHYVKNAGDHRAVAD

Nucleotide


Download         Length: 318 bp        

>NTDB_id=62875 N597_RS00245 WP_023022076.1 48660..48977(+) (comYC) [Streptococcus ilei]
ATGAAATCATTGCGCACACTCAAGGTAAAAGCTTTTACTCTGATTGAAATGTTAGTTGTTTTGCTCATTATCAGCGTTCT
TCTCTTGCTCTTTGTTCCGAACTTGACCAAGCAGAAAGATTCGGTAACAGATACAGGAAATCGAGCAGTCGTCAAAGTCG
TGGAGAGCCAGGCTGAGCTCTATGAACTCAATCATCAGAATGAAAAAGCTAGTCTTTCTAAGCTAGTCGCAGAAGGACAA
ATCACTCAAAAACAAGCAGAAGCCTACCGTGCTCACTATGTGAAGAATGCAGGTGATCACCGTGCGGTTGCAGATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC/cglC Streptococcus mitis SK321

69.524

100

0.695
  comYC Streptococcus gordonii str. Challis substr. CH1

69.524

100

0.695
  comYC Streptococcus mutans UA140

67.619

100

0.676
  comYC Streptococcus mutans UA159

67.619

100

0.676
  comGC/cglC Streptococcus pneumoniae TIGR4

66.667

100

0.667
  comGC/cglC Streptococcus pneumoniae D39

66.667

100

0.667
  comGC/cglC Streptococcus pneumoniae Rx1

66.667

100

0.667
  comGC/cglC Streptococcus mitis NCTC 12261

66.667

100

0.667
  comGC/cglC Streptococcus pneumoniae R6

66.667

100

0.667
  comGC Lactococcus lactis subsp. cremoris KW2

61.224

93.333

0.571
  comYC Streptococcus suis isolate S10

64.045

84.762

0.543
  comGC Staphylococcus aureus MW2

51.282

74.286

0.381
  comGC Staphylococcus aureus N315

51.282

74.286

0.381

Multiple sequence alignment