Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF/cglF   Type   Machinery gene
Locus tag   N597_RS00260 Genome accession   NC_022582
Coordinates   49614..50066 (+) Length   150 a.a.
NCBI ID   WP_040803180.1    Uniprot ID   -
Organism   Streptococcus ilei     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 44614..55066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N597_RS00225 (N597_00235) - 44965..46068 (+) 1104 WP_006595140.1 glycosyl hydrolase family 8 -
  N597_RS00230 (N597_00240) - 46275..46652 (+) 378 WP_006595139.1 DUF1033 family protein -
  N597_RS00235 (N597_00245) comYA 46758..47699 (+) 942 WP_006597118.1 competence type IV pilus ATPase ComGA Machinery gene
  N597_RS00240 (N597_00250) comYB 47641..48663 (+) 1023 WP_023022075.1 competence type IV pilus assembly protein ComGB Machinery gene
  N597_RS00245 (N597_00255) comYC 48660..48977 (+) 318 WP_023022076.1 competence type IV pilus major pilin ComGC Machinery gene
  N597_RS00250 (N597_00260) comGD/cglD 48946..49371 (+) 426 WP_042507426.1 competence type IV pilus minor pilin ComGD Machinery gene
  N597_RS00255 (N597_00265) comGE 49337..49630 (+) 294 WP_006595134.1 competence type IV pilus minor pilin ComGE -
  N597_RS00260 (N597_00270) comGF/cglF 49614..50066 (+) 453 WP_040803180.1 competence type IV pilus minor pilin ComGF Machinery gene
  N597_RS00265 (N597_00275) comGG 50032..50478 (+) 447 WP_006595132.1 competence type IV pilus minor pilin ComGG -
  N597_RS00270 (N597_00280) comYH 50510..51463 (+) 954 WP_023022079.1 class I SAM-dependent methyltransferase Machinery gene
  N597_RS00275 (N597_00285) - 51512..52708 (+) 1197 WP_023022080.1 acetate kinase -
  N597_RS00280 (N597_00290) - 52860..53534 (+) 675 WP_224781595.1 CPBP family intramembrane glutamic endopeptidase -
  N597_RS00285 (N597_00295) folP 53694..54650 (+) 957 WP_023022082.1 dihydropteroate synthase -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 17207.81 Da        Isoelectric Point: 5.0874

>NTDB_id=62877 N597_RS00260 WP_040803180.1 49614..50066(+) (comGF/cglF) [Streptococcus ilei]
MLKRTKLPAFTLLEALVALLVISGGLLVFQGLTSLLRQELQYQSHIKQEEWLLFQDQLDIELSRSQFEEVRDNKFYLVQD
QKPIAIGLAKGGDIRKTDATGRGYQPMIDGVESARIEKRGDLVSIQLRFEEGLEREVVYRVVEKDKKEAD

Nucleotide


Download         Length: 453 bp        

>NTDB_id=62877 N597_RS00260 WP_040803180.1 49614..50066(+) (comGF/cglF) [Streptococcus ilei]
CTGTTGAAAAGAACTAAACTGCCAGCCTTTACTTTACTGGAGGCCTTGGTTGCCCTGCTCGTCATCAGCGGTGGTTTATT
GGTGTTTCAAGGATTGACAAGCCTTTTGCGTCAAGAACTCCAGTACCAAAGTCACATCAAGCAAGAGGAATGGTTGCTCT
TTCAGGACCAGCTGGACATTGAATTGTCTCGTAGCCAATTTGAAGAGGTCAGAGATAACAAATTCTATCTTGTTCAGGAT
CAAAAACCCATAGCCATTGGACTGGCTAAGGGGGGAGATATCCGAAAGACAGATGCGACTGGCCGTGGCTATCAACCGAT
GATAGATGGAGTTGAATCCGCCAGGATTGAAAAAAGAGGAGATCTGGTGTCTATTCAACTGCGCTTTGAAGAAGGGTTAG
AAAGGGAGGTGGTCTACCGTGTGGTGGAAAAGGATAAAAAAGAAGCAGATTGA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(38-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF/cglF Streptococcus pneumoniae Rx1

56.944

96

0.547
  comGF/cglF Streptococcus pneumoniae D39

56.944

96

0.547
  comGF/cglF Streptococcus pneumoniae R6

56.944

96

0.547
  comGF/cglF Streptococcus pneumoniae TIGR4

56.944

96

0.547
  comGF/cglF Streptococcus mitis NCTC 12261

55.396

92.667

0.513
  comGF/cglF Streptococcus mitis SK321

55.396

92.667

0.513
  comYF Streptococcus mutans UA159

41.379

96.667

0.4
  comYF Streptococcus mutans UA140

41.379

96.667

0.4

Multiple sequence alignment