Detailed information NTG0062878

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: TthHC11_RS00570
• Genome accession: NZ_AP019801
• Coordinates: 106820..107890 (+)
• Length: 356 a.a.
• NCBI ID: WP_143590212.1
• Uniprot ID: -
• Organism: Thermus thermophilus strain HC11
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 101820..112890

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
TthHC11_RS00550 (TthHC11_01040)	-	102328..103110 (+)	783	WP_014628894.1	RNA methyltransferase	-
TthHC11_RS00555 (TthHC11_01050)	groES	103208..103513 (+)	306	WP_011174076.1	co-chaperone GroES	-
TthHC11_RS00560 (TthHC11_01060)	groL	103526..105157 (+)	1632	WP_011174077.1	chaperonin GroEL	-
TthHC11_RS00565 (TthHC11_01070)	-	105221..106753 (-)	1533	WP_011174078.1	thermostable carboxypeptidase 1	-
TthHC11_RS00570 (TthHC11_01080)	pilD	106820..107890 (+)	1071	WP_143590212.1	A24 family peptidase	Machinery gene
TthHC11_RS00575 (TthHC11_01090)	-	107928..108431 (+)	504	WP_011227820.1	DUF2939 domain-containing protein	-
TthHC11_RS00580 (TthHC11_01100)	-	108445..109365 (+)	921	WP_011227819.1	nitroreductase family protein	-
TthHC11_RS00585 (TthHC11_01110)	-	109319..110116 (-)	798	WP_143590214.1	C40 family peptidase	-
TthHC11_RS00590 (TthHC11_01120)	-	110117..110875 (-)	759	WP_041443621.1	DUF721 domain-containing protein	-
TthHC11_RS00595 (TthHC11_01130)	recF	110860..111891 (-)	1032	WP_011227816.1	DNA replication and repair protein RecF	Machinery gene

Sequence

Protein

• Length: 356 a.a.
• Molecular weight: 38017.29 Da
• Isoelectric Point: 7.7135

>NTDB_id=62878 TthHC11_RS00570 WP_143590212.1 106820..107890(+) (pilD) [Thermus thermophilus strain HC11]
MWPLFALLLGLAVGSFLNVVVHRLPRGESVAYPPSRCPQCGHRLGPWDLVPVLSYLALKGRCRYCARPISPRYPLVEALT
GGLFLLASLFYPPGVEALLVFLFLAFLVALAFIDVDTFELPDPLTYGLLFLGLLASWALAFPLPFRESLDGSLMAAGGLA
LVAGYGNLFLRRFREARAEVPVGPHQVHMAALFGALLGPGVGMALAFLAWALSARTGRAVALPDRLTLPLLPLAFLLAPA
LGLDFLESLKGSLLAAGGLALAGGLYWAFRPLPEEGEEEEPVAMGYGDVKLLGALGAWLGPYAFLALFLGVFAGALLGLL
LRQRKLPFGPYLALGGVVAFFFGEALWGAYLRLLGV

Nucleotide

• Length: 1071 bp

>NTDB_id=62878 TthHC11_RS00570 WP_143590212.1 106820..107890(+) (pilD) [Thermus thermophilus strain HC11]
ATGTGGCCCCTCTTCGCCCTGCTCCTCGGCCTCGCGGTGGGTTCCTTTCTCAACGTGGTGGTCCACCGCCTGCCCCGGGG
GGAGTCCGTCGCCTACCCCCCGTCCCGCTGCCCCCAGTGCGGCCACCGCCTGGGGCCTTGGGACCTGGTCCCCGTCCTCT
CCTACCTCGCCCTAAAGGGGCGGTGCCGCTACTGCGCCCGTCCCATCTCCCCCCGCTACCCCCTGGTGGAGGCCCTCACG
GGGGGGCTTTTTCTCCTCGCAAGCCTCTTCTACCCCCCTGGGGTGGAGGCCCTCTTGGTCTTCCTCTTCCTCGCCTTTCT
CGTGGCCCTCGCCTTCATTGACGTGGACACCTTTGAGCTTCCCGATCCCCTCACCTACGGCCTCCTCTTCCTTGGGCTTT
TGGCCTCCTGGGCGCTGGCCTTCCCCCTCCCCTTTAGGGAGAGCCTGGACGGAAGCCTCATGGCCGCCGGGGGGCTCGCC
CTGGTGGCGGGGTACGGGAACCTCTTTCTGCGGCGCTTTAGGGAGGCCAGGGCCGAGGTCCCCGTGGGGCCCCACCAGGT
CCACATGGCGGCCCTCTTTGGGGCGCTCTTGGGCCCAGGGGTGGGGATGGCCCTCGCCTTCCTCGCTTGGGCCCTCTCCG
CCCGCACGGGGCGGGCGGTGGCCCTCCCCGACCGGCTCACCCTGCCCCTTTTGCCCCTCGCCTTCCTCCTTGCCCCCGCC
CTAGGCCTGGACTTCCTGGAAAGCCTTAAGGGAAGCCTCCTCGCTGCCGGGGGGCTCGCCCTCGCCGGGGGGCTTTACTG
GGCCTTCCGGCCCCTTCCCGAGGAGGGCGAGGAGGAGGAGCCCGTGGCCATGGGCTACGGGGACGTGAAGCTTCTGGGGG
CCCTCGGGGCCTGGCTTGGCCCTTACGCCTTCCTCGCCCTCTTCCTCGGGGTCTTCGCCGGGGCGCTTTTGGGCCTTCTC
CTTAGGCAAAGGAAGCTCCCCTTCGGCCCCTACCTCGCCCTCGGGGGGGTGGTGGCCTTCTTCTTCGGGGAGGCCCTCTG
GGGGGCGTACCTGCGCCTTCTGGGCGTTTGA

Domains

Predicted by InterProScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (8-88)

• Type IV leader peptidase family (Peptidase_A24) (207-319)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	45.17	100	0.486