Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD/cglD   Type   Machinery gene
Locus tag   N597_RS00250 Genome accession   NC_022582
Coordinates   48946..49371 (+) Length   141 a.a.
NCBI ID   WP_042507426.1    Uniprot ID   -
Organism   Streptococcus ilei     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 43946..54371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N597_RS00225 (N597_00235) - 44965..46068 (+) 1104 WP_006595140.1 glycosyl hydrolase family 8 -
  N597_RS00230 (N597_00240) - 46275..46652 (+) 378 WP_006595139.1 DUF1033 family protein -
  N597_RS00235 (N597_00245) comYA 46758..47699 (+) 942 WP_006597118.1 competence type IV pilus ATPase ComGA Machinery gene
  N597_RS00240 (N597_00250) comYB 47641..48663 (+) 1023 WP_023022075.1 competence type IV pilus assembly protein ComGB Machinery gene
  N597_RS00245 (N597_00255) comYC 48660..48977 (+) 318 WP_023022076.1 competence type IV pilus major pilin ComGC Machinery gene
  N597_RS00250 (N597_00260) comGD/cglD 48946..49371 (+) 426 WP_042507426.1 competence type IV pilus minor pilin ComGD Machinery gene
  N597_RS00255 (N597_00265) comGE 49337..49630 (+) 294 WP_006595134.1 competence type IV pilus minor pilin ComGE -
  N597_RS00260 (N597_00270) comGF/cglF 49614..50066 (+) 453 WP_040803180.1 competence type IV pilus minor pilin ComGF Machinery gene
  N597_RS00265 (N597_00275) comGG 50032..50478 (+) 447 WP_006595132.1 competence type IV pilus minor pilin ComGG -
  N597_RS00270 (N597_00280) comYH 50510..51463 (+) 954 WP_023022079.1 class I SAM-dependent methyltransferase Machinery gene
  N597_RS00275 (N597_00285) - 51512..52708 (+) 1197 WP_023022080.1 acetate kinase -
  N597_RS00280 (N597_00290) - 52860..53534 (+) 675 WP_224781595.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15748.24 Da        Isoelectric Point: 7.2775

>NTDB_id=62876 N597_RS00250 WP_042507426.1 48946..49371(+) (comGD/cglD) [Streptococcus ilei]
MQVITVRLQIKAFTLLESLLTLGIVSLLCWLLAGSVHQAFGQVEETLFFSEFERVYQETQKMSIAKEERALLSIDHGGVH
SPYQELPLPKGVEVVREKQLTFDPAGGNSSLTKIQFQTEKEVVTYQLAIGNGKIKKSTAPR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=62876 N597_RS00250 WP_042507426.1 48946..49371(+) (comGD/cglD) [Streptococcus ilei]
ATGCAGGTGATCACCGTGCGGTTGCAGATTAAAGCTTTCACCCTTCTAGAGAGCTTACTAACTCTAGGTATCGTCAGTCT
TCTATGTTGGCTGCTAGCTGGGTCAGTCCATCAAGCCTTTGGGCAGGTGGAAGAAACATTGTTTTTCTCGGAATTTGAAC
GGGTCTATCAGGAGACACAAAAGATGAGTATTGCAAAAGAGGAGAGAGCTCTTCTTTCCATCGACCACGGTGGGGTTCAT
AGTCCCTATCAAGAATTACCGCTTCCAAAAGGGGTGGAAGTGGTCAGAGAGAAGCAACTGACCTTTGATCCAGCAGGAGG
CAATTCAAGCCTGACCAAGATTCAATTTCAGACAGAGAAAGAGGTGGTGACTTATCAGTTGGCAATTGGGAATGGAAAAA
TTAAAAAATCGACGGCTCCCCGCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD/cglD Streptococcus mitis NCTC 12261

52.713

91.489

0.482
  comGD/cglD Streptococcus pneumoniae TIGR4

52.756

90.071

0.475
  comGD/cglD Streptococcus pneumoniae D39

51.969

90.071

0.468
  comGD/cglD Streptococcus pneumoniae R6

51.969

90.071

0.468
  comGD/cglD Streptococcus pneumoniae Rx1

51.969

90.071

0.468
  comYD Streptococcus gordonii str. Challis substr. CH1

50

93.617

0.468
  comGD/cglD Streptococcus mitis SK321

51.181

90.071

0.461
  comYD Streptococcus mutans UA140

48.462

92.199

0.447
  comYD Streptococcus mutans UA159

48.462

92.199

0.447

Multiple sequence alignment