Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   LH706_RS04695 Genome accession   NZ_CP085043
Coordinates   994815..995954 (+) Length   379 a.a.
NCBI ID   WP_011002591.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain RS638     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 989815..1000954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LH706_RS04660 (LH706_04675) - 989867..990109 (+) 243 WP_011002597.1 hypothetical protein -
  LH706_RS04665 (LH706_04680) - 990268..990768 (+) 501 WP_003271865.1 Dps family protein -
  LH706_RS04670 (LH706_04685) ubiA 990841..991716 (+) 876 WP_247393291.1 4-hydroxybenzoate octaprenyltransferase -
  LH706_RS04675 (LH706_04690) - 991713..991991 (-) 279 WP_011002595.1 hypothetical protein -
  LH706_RS04680 (LH706_04695) proC 992013..992837 (-) 825 WP_071011337.1 pyrroline-5-carboxylate reductase -
  LH706_RS04685 (LH706_04700) - 992872..993594 (-) 723 WP_021155191.1 YggS family pyridoxal phosphate-dependent enzyme -
  LH706_RS04690 (LH706_04705) pilT 993719..994762 (+) 1044 WP_011002592.1 type IV pilus twitching motility protein PilT Machinery gene
  LH706_RS04695 (LH706_04710) pilU 994815..995954 (+) 1140 WP_011002591.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  LH706_RS04700 (LH706_04715) - 996149..996589 (+) 441 WP_016723685.1 type IV pilin protein -
  LH706_RS04705 (LH706_04720) - 996593..997081 (+) 489 WP_016723684.1 Tfp pilus assembly protein FimT/FimU -
  LH706_RS04710 (LH706_04725) pilV 997078..997668 (+) 591 WP_011002588.1 type IV pilus modification protein PilV -
  LH706_RS04715 (LH706_04730) - 997665..998693 (+) 1029 WP_016723683.1 PilW family protein -
  LH706_RS04720 (LH706_04735) - 998697..999233 (+) 537 WP_011002586.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 42237.78 Da        Isoelectric Point: 6.9274

>NTDB_id=614874 LH706_RS04695 WP_011002591.1 994815..995954(+) (pilU) [Ralstonia pseudosolanacearum strain RS638]
MLDRDAATRYIHELLQLMVNSRGSDLFITAEFPPAIKVDGKVTPISQQPLTTVQAMGLVKAIMSEKQLREFEESFECNFA
ITAPTAGRFRVSAFMQQGRAGMVLRTITTKIPTLAELDLPPILNEVAMSKRGLVVVVGATGSGKSTTLAAMVGYRNAHSY
GHIITIEDPVEYVHAHHNCVVTQREVGVDTESWHVALKNTLRQAPDVILIGEIRDRDTMEYAIQYAETGHLCLATLHANS
SNQAIDRIINFFPEERRQQLLIDLSLNLRAMIAQRLLPRKGKKGRAPAIEILLGTPLVSDLIFKGEVHELKEVMKKSREQ
GMVCFDQALFELYEADKITYEDALRNADSLNDLRLQIKLHSKRGGPVDLTAGTEHLNVM

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=614874 LH706_RS04695 WP_011002591.1 994815..995954(+) (pilU) [Ralstonia pseudosolanacearum strain RS638]
ATGCTGGACCGCGACGCCGCCACCAGATATATCCACGAACTCTTGCAGCTCATGGTGAACAGCCGTGGCTCGGACTTGTT
CATCACCGCGGAATTCCCGCCCGCCATCAAGGTGGACGGCAAAGTCACGCCGATCTCGCAGCAGCCGCTGACCACCGTCC
AGGCCATGGGCCTGGTCAAGGCGATCATGAGCGAGAAGCAGCTGCGCGAGTTCGAAGAGTCGTTCGAGTGCAACTTCGCC
ATCACCGCGCCCACCGCCGGCCGCTTCCGCGTGTCGGCGTTCATGCAGCAGGGCCGCGCCGGCATGGTGCTGCGGACCAT
CACCACCAAGATCCCGACGCTCGCCGAACTGGATCTGCCGCCCATCCTCAACGAAGTCGCGATGAGCAAGCGCGGGCTCG
TGGTGGTGGTGGGGGCGACGGGCTCCGGCAAGTCGACCACGCTGGCGGCGATGGTCGGCTACCGCAACGCGCATTCGTAC
GGCCACATCATCACCATCGAAGACCCGGTGGAATATGTGCACGCACACCACAACTGCGTCGTGACGCAGCGCGAGGTGGG
CGTGGACACGGAATCCTGGCACGTGGCGCTGAAGAACACGCTGCGGCAGGCGCCGGACGTGATCCTGATCGGCGAAATCC
GCGATCGCGACACGATGGAGTACGCCATCCAGTACGCCGAAACCGGCCACTTGTGCCTGGCCACGCTGCACGCCAATAGC
TCGAACCAGGCGATCGACCGGATCATCAACTTCTTCCCGGAAGAGCGGCGTCAGCAGTTGCTGATCGATCTGTCCCTGAA
CCTGCGCGCCATGATCGCGCAGCGCCTGCTGCCGCGCAAAGGCAAGAAGGGCCGCGCGCCGGCGATCGAAATCCTGCTGG
GCACGCCGCTGGTGTCCGACCTGATCTTCAAGGGCGAGGTGCACGAGCTCAAGGAGGTCATGAAGAAGTCGCGCGAGCAG
GGCATGGTCTGTTTCGATCAGGCGCTGTTCGAGCTCTACGAGGCGGACAAGATCACCTATGAGGATGCGCTGCGCAACGC
GGATTCGCTGAACGACCTGCGTCTGCAGATCAAGCTGCACAGCAAGCGCGGCGGGCCGGTGGATCTGACGGCCGGCACCG
AGCATCTCAACGTGATGTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(38-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

62.323

93.14

0.58
  pilU Acinetobacter baylyi ADP1

55.432

94.723

0.525
  pilU Vibrio cholerae strain A1552

55.367

93.404

0.517
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.917

88.918

0.391
  pilT Legionella pneumophila strain Lp02

43.544

87.863

0.383
  pilT Legionella pneumophila strain ERS1305867

43.544

87.863

0.383
  pilT Vibrio cholerae strain A1552

45.426

83.641

0.38
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

45.426

83.641

0.38
  pilT Pseudomonas aeruginosa PAK

42.73

88.918

0.38
  pilT Acinetobacter baylyi ADP1

44.41

84.96

0.377
  pilT Pseudomonas stutzeri DSM 10701

41.543

88.918

0.369
  pilT Acinetobacter baumannii D1279779

43.574

84.169

0.367
  pilT Acinetobacter baumannii strain A118

43.574

84.169

0.367
  pilT Acinetobacter nosocomialis M2

43.574

84.169

0.367