Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilAI   Type   Machinery gene
Locus tag   K9838_RS16305 Genome accession   NZ_CP083575
Coordinates   3695238..3695666 (-) Length   142 a.a.
NCBI ID   WP_017155146.1    Uniprot ID   A0A8I2BVU4
Organism   Xanthomonas phaseoli pv. manihotis strain CHN01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3690238..3700666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9838_RS16290 (K9838_16300) pilR 3691055..3692509 (+) 1455 WP_017155148.1 sigma-54 dependent transcriptional regulator Regulator
  K9838_RS16295 (K9838_16305) pilB 3692960..3694669 (-) 1710 WP_017155147.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K9838_RS16300 (K9838_16310) - 3694724..3695134 (-) 411 WP_033474088.1 pilin -
  K9838_RS16305 (K9838_16315) pilA/pilAI 3695238..3695666 (-) 429 WP_017155146.1 pilin Machinery gene
  K9838_RS16310 (K9838_16320) pilC 3695997..3697253 (+) 1257 WP_017155145.1 type II secretion system F family protein Machinery gene
  K9838_RS16315 (K9838_16325) - 3697260..3698123 (+) 864 WP_017155144.1 A24 family peptidase -
  K9838_RS16320 (K9838_16330) coaE 3698137..3698748 (+) 612 WP_017155143.1 dephospho-CoA kinase -
  K9838_RS16325 (K9838_16335) - 3699414..3700516 (+) 1103 WP_099770619.1 IS3 family transposase -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 14328.57 Da        Isoelectric Point: 8.5006

>NTDB_id=606261 K9838_RS16305 WP_017155146.1 3695238..3695666(-) (pilA/pilAI) [Xanthomonas phaseoli pv. manihotis strain CHN01]
MNKQKGFTLIELMIVIAIIAILAAIALPMYQDYVAKSQVAAGLAEITPGKVNAETRIAEGKAATTTAADVGLATSPRCTA
LVVSVDPSGTSSIACTLAGNAQVATKTVTWSRTADNATTGASGVWSCATTVAAKLKPATCQG

Nucleotide


Download         Length: 429 bp        

>NTDB_id=606261 K9838_RS16305 WP_017155146.1 3695238..3695666(-) (pilA/pilAI) [Xanthomonas phaseoli pv. manihotis strain CHN01]
ATGAACAAGCAGAAGGGTTTCACGCTGATCGAATTGATGATCGTCATTGCAATTATCGCGATCCTGGCCGCTATCGCGCT
TCCGATGTACCAGGACTATGTGGCAAAGTCCCAAGTCGCTGCTGGTCTCGCTGAAATCACCCCTGGCAAGGTGAACGCTG
AGACCCGTATCGCGGAAGGCAAGGCCGCCACCACGACAGCAGCTGACGTGGGTTTGGCAACTAGCCCCCGTTGCACCGCC
TTGGTGGTCTCGGTTGATCCGAGTGGTACCTCGAGCATCGCTTGCACGCTGGCTGGCAACGCTCAAGTTGCCACCAAGAC
CGTTACCTGGTCGCGGACTGCCGATAACGCCACTACTGGCGCATCGGGTGTTTGGAGTTGTGCGACGACTGTTGCTGCCA
AGCTGAAGCCGGCGACCTGCCAGGGCTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilAI Pseudomonas stutzeri DSM 10701

51.429

98.592

0.507
  pilA Acinetobacter baumannii strain A118

46.528

100

0.472
  pilA Ralstonia pseudosolanacearum GMI1000

36.42

100

0.415
  pilA/pilAII Pseudomonas stutzeri DSM 10701

40.141

100

0.401
  pilA Pseudomonas aeruginosa PAK

37.013

100

0.401
  comP Acinetobacter baylyi ADP1

37.748

100

0.401
  pilA Vibrio cholerae strain A1552

38.356

100

0.394
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

38.356

100

0.394
  pilA Vibrio cholerae C6706

38.356

100

0.394
  pilA2 Legionella pneumophila str. Paris

38.571

98.592

0.38
  pilA2 Legionella pneumophila strain ERS1305867

38.571

98.592

0.38