Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   K9838_RS16290 Genome accession   NZ_CP083575
Coordinates   3691055..3692509 (+) Length   484 a.a.
NCBI ID   WP_017155148.1    Uniprot ID   -
Organism   Xanthomonas phaseoli pv. manihotis strain CHN01     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3686055..3697509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9838_RS16270 (K9838_16280) - 3686441..3686695 (-) 255 WP_017167311.1 hypothetical protein -
  K9838_RS16275 (K9838_16285) sucD 3686869..3687744 (-) 876 WP_017155151.1 succinate--CoA ligase subunit alpha -
  K9838_RS16280 (K9838_16290) sucC 3687769..3688938 (-) 1170 WP_007965356.1 ADP-forming succinate--CoA ligase subunit beta -
  K9838_RS16285 (K9838_16295) - 3689170..3690783 (+) 1614 WP_017155150.1 HAMP domain-containing sensor histidine kinase -
  K9838_RS16290 (K9838_16300) pilR 3691055..3692509 (+) 1455 WP_017155148.1 sigma-54 dependent transcriptional regulator Regulator
  K9838_RS16295 (K9838_16305) pilB 3692960..3694669 (-) 1710 WP_017155147.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K9838_RS16300 (K9838_16310) - 3694724..3695134 (-) 411 WP_033474088.1 pilin -
  K9838_RS16305 (K9838_16315) pilA/pilAI 3695238..3695666 (-) 429 WP_017155146.1 pilin Machinery gene
  K9838_RS16310 (K9838_16320) pilC 3695997..3697253 (+) 1257 WP_017155145.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52321.00 Da        Isoelectric Point: 6.6960

>NTDB_id=606259 K9838_RS16290 WP_017155148.1 3691055..3692509(+) (pilR) [Xanthomonas phaseoli pv. manihotis strain CHN01]
MGGDPLDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASR
LLGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAAPSGGAAAEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=606259 K9838_RS16290 WP_017155148.1 3691055..3692509(+) (pilR) [Xanthomonas phaseoli pv. manihotis strain CHN01]
TTGGGCGGCGACCCGCTCGACAATTGTCGACCGTCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGCCTGCGCATCAGCACCG
CTGCCAACCTGGCCGAGGCGCGCGAGTTGCTGGCCAACAATCCCTACGATTTGTGCCTGACCGACATGCGGTTGCCAGAC
GGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTATCCGCAGACGCCGGTGGCGATGATCACCGCCTTCGGCAG
CATGGACCTGGCCGTGGAAGCACTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCGCCACCGCCGCCACCGGAACAGGCCAGCCGC
CTGCTTGGCGACTCCAGCGCCATGGAAAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGCAGCCAGGCGCCGGTCTACAT
CGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCACGTACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCG
TGCCGGTCAACTGCGGCGCCATTCCCGCCGAACTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCACGGCGGCACGCTGTTTCTGGACGAAGTGGCCGAATTGCCGTT
GCAAATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGACCGGTCGGCGCATCCAGCGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACCCACAAGGATCTGGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACCTGTACTAC
CGCATCAACGTGATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCGCAGCTGGCCGCGGCCATCAT
CGCGCGGCTGGCGCACAGCCATGGCCGCCCCATTCCGCTGCTGACCCAATCGGCGCTCGACGCATTGAATCACTACGGCT
TCCCCGGAAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCCACC
GACCTGCGCCTGCCCGCCCACGGCGGCCACCGTCTGGCCGCCCCCTCAGGAGGTGCCGCGGCCGAACCGCGCGAAGCCGT
CGTCGACATCGACCCCGCCTCAGCCGCGCTGCCGTCCTACATCGAACAACTGGAACGCGCCGCGATCCAGAAGGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACTGCCGCGCAGCTGGGCATTACGTTTCGGGCGCTGCGCTACAAATTGAAGAAG
CTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(28-134)

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.283

95.661

0.605
  pilR Acinetobacter baumannii strain A118

49.138

95.868

0.471