Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K9838_RS16310 Genome accession   NZ_CP083575
Coordinates   3695997..3697253 (+) Length   418 a.a.
NCBI ID   WP_017155145.1    Uniprot ID   -
Organism   Xanthomonas phaseoli pv. manihotis strain CHN01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3690997..3702253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9838_RS16290 (K9838_16300) pilR 3691055..3692509 (+) 1455 WP_017155148.1 sigma-54 dependent transcriptional regulator Regulator
  K9838_RS16295 (K9838_16305) pilB 3692960..3694669 (-) 1710 WP_017155147.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K9838_RS16300 (K9838_16310) - 3694724..3695134 (-) 411 WP_033474088.1 pilin -
  K9838_RS16305 (K9838_16315) pilA/pilAI 3695238..3695666 (-) 429 WP_017155146.1 pilin Machinery gene
  K9838_RS16310 (K9838_16320) pilC 3695997..3697253 (+) 1257 WP_017155145.1 type II secretion system F family protein Machinery gene
  K9838_RS16315 (K9838_16325) - 3697260..3698123 (+) 864 WP_017155144.1 A24 family peptidase -
  K9838_RS16320 (K9838_16330) coaE 3698137..3698748 (+) 612 WP_017155143.1 dephospho-CoA kinase -
  K9838_RS16325 (K9838_16335) - 3699414..3700516 (+) 1103 WP_099770619.1 IS3 family transposase -
  K9838_RS16330 (K9838_16340) - 3700547..3700792 (+) 246 Protein_3198 SymE family type I addiction module toxin -
  K9838_RS16335 (K9838_16345) - 3700898..3702232 (-) 1335 WP_017154754.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45560.88 Da        Isoelectric Point: 10.2682

>NTDB_id=606262 K9838_RS16310 WP_017155145.1 3695997..3697253(+) (pilC) [Xanthomonas phaseoli pv. manihotis strain CHN01]
MAAVRGAGKTKPISQLEQASPFVWEGTDKRGVKMKGEQTAKNANMLRAELRRQGITPTVVKVKPKPLFSAAGKKVSAKDI
SFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRNMVGQIRADIEGGSSLHEAVSRHPVQFDELYRNLVKAGEGAGVLET
VLDTIATYKENIEALKGKIKKALFYPTMVVAVALIVSAILLIFVVPQFEDVFKGFGAELPAFTQIIVNMSRFMVSWWWLI
LFTIIVAVISFIFAYKRSPSMQHGMDRIILKVPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNSVYETA
VLRMRDDVSVGYPVNVAMKQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVG
GMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=606262 K9838_RS16310 WP_017155145.1 3695997..3697253(+) (pilC) [Xanthomonas phaseoli pv. manihotis strain CHN01]
ATGGCAGCAGTACGTGGTGCGGGCAAGACAAAGCCGATCTCGCAACTAGAGCAAGCTAGTCCGTTTGTTTGGGAGGGAAC
AGACAAACGGGGCGTGAAGATGAAGGGTGAGCAGACGGCAAAAAATGCAAACATGCTACGTGCGGAGCTACGCAGGCAGG
GCATAACGCCCACAGTTGTAAAGGTAAAACCGAAACCATTATTTAGCGCGGCCGGTAAGAAGGTGTCCGCCAAGGACATC
TCATTCTTCAGCCGGCAGATGGCAACAATGATGAAATCCGGAGTTCCGATCGTTGGAGCACTTGAGATTATCGGCAGCGG
CCAGAAAAATCCGCGCATGCGTAACATGGTTGGGCAAATCCGTGCTGACATCGAAGGCGGCTCGTCACTGCATGAAGCGG
TGAGTAGACACCCCGTGCAGTTTGACGAACTCTACAGGAACCTCGTCAAAGCCGGCGAAGGCGCCGGCGTTTTGGAAACG
GTGCTGGATACCATTGCAACATACAAGGAGAATATCGAAGCACTGAAAGGAAAAATCAAAAAGGCTTTATTCTATCCGAC
AATGGTTGTCGCGGTGGCACTAATTGTCAGCGCGATCCTGCTTATCTTTGTGGTTCCTCAGTTTGAGGATGTCTTCAAGG
GCTTTGGTGCGGAACTACCCGCCTTCACCCAGATCATTGTAAATATGTCGCGGTTTATGGTCTCGTGGTGGTGGCTGATT
CTCTTCACCATAATCGTCGCAGTGATTAGCTTTATCTTTGCCTACAAGCGCTCTCCCTCGATGCAACACGGCATGGACCG
GATCATCCTCAAGGTACCAATCATTGGTCAGATCATGCACAACAGTTCCATTGCACGTTTCGCGCGAACGACCGCAGTAA
CTTTCAAAGCGGGTGTTCCACTGGTAGAAGCATTGAGTATCGTAGCTGGTGCAACCGGCAACTCGGTATACGAGACTGCC
GTACTGAGGATGCGAGACGATGTCTCAGTAGGCTACCCAGTGAACGTAGCAATGAAACAGGTCAACCTGTTTCCGCACAT
GGTGGTACAGATGACCGCCATCGGCGAAGAAGCGGGCGCGCTGGATGCCATGTTGTTCAAGGTGGCTGAGTATTTCGAGC
AGGAAGTCAACAACGCGGTCGATGCGCTCAGCAGCCTGATCGAACCCCTGATCATGGTGTTCATTGGTACCATCGTCGGC
GGCATGGTCATCGGTATGTACCTGCCCATCTTCAAGCTCGCCTCGGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(83-206)

Type II secretion system (T2SS), protein F (T2SSF)

(287-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

52.513

95.215

0.5
  pilC Legionella pneumophila strain ERS1305867

51.232

97.129

0.498
  pilC Acinetobacter baylyi ADP1

50.126

94.976

0.476
  pilC Acinetobacter baumannii D1279779

50.126

94.976

0.476
  pilG Neisseria gonorrhoeae MS11

43.719

95.215

0.416
  pilG Neisseria meningitidis 44/76-A

43.467

95.215

0.414
  pilC Vibrio cholerae strain A1552

41.814

94.976

0.397
  pilC Vibrio campbellii strain DS40M4

40.15

95.933

0.385