Detailed information NTG0599917

Bioinformatically predicted

Overview

• Name: comYC
• Type: Machinery gene
• Locus tag: K6972_RS01025
• Genome accession: NZ_CP082203
• Coordinates: 160924..161205 (+)
• Length: 93 a.a.
• NCBI ID: WP_114866111.1
• Uniprot ID: -
• Organism: Streptococcus suis strain NJ3
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 155924..166205

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6972_RS00990 (K6972_00990)	-	157564..157827 (+)	264	WP_024410576.1	hypothetical protein	-
K6972_RS00995 (K6972_00995)	-	157840..158295 (+)	456	WP_016056164.1	hypothetical protein	-
K6972_RS01000 (K6972_01000)	-	158270..158473 (+)	204	WP_016056163.1	putative holin protein	-
K6972_RS01005 (K6972_01005)	-	158603..159313 (+)	711	WP_016056162.1	CHAP domain-containing protein	-
K6972_RS01010 (K6972_01010)	prx	159461..159646 (+)	186	WP_016056161.1	hypothetical protein	Regulator
K6972_RS01015 (K6972_01015)	-	159671..159973 (+)	303	Protein_168	ATPase, T2SS/T4P/T4SS family	-
K6972_RS01020 (K6972_01020)	comYB	159885..160922 (+)	1038	WP_261984178.1	competence type IV pilus assembly protein ComGB	Machinery gene
K6972_RS01025 (K6972_01025)	comYC	160924..161205 (+)	282	WP_114866111.1	competence type IV pilus major pilin ComGC	Machinery gene
K6972_RS01030 (K6972_01030)	comGD	161186..161593 (+)	408	WP_114866112.1	competence type IV pilus minor pilin ComGD	-
K6972_RS01035 (K6972_01035)	comYE	161565..161858 (+)	294	WP_205026479.1	competence type IV pilus minor pilin ComGE	Machinery gene
K6972_RS01040 (K6972_01040)	comGF/cglF	161845..162279 (+)	435	WP_024407345.1	competence type IV pilus minor pilin ComGF	Machinery gene
K6972_RS01045 (K6972_01045)	comGG	162257..162667 (+)	411	WP_114866114.1	competence type IV pilus minor pilin ComGG	-
K6972_RS01050 (K6972_01050)	comYH	162724..163677 (+)	954	WP_024414316.1	class I SAM-dependent methyltransferase	Machinery gene
K6972_RS01055 (K6972_01055)	-	163727..164914 (+)	1188	WP_114866116.1	acetate kinase	-
K6972_RS01060 (K6972_01060)	-	165230..165781 (+)	552	WP_074391332.1	folate family ECF transporter S component	-

Sequence

Protein

• Length: 93 a.a.
• Molecular weight: 10386.27 Da
• Isoelectric Point: 5.1369

>NTDB_id=599917 K6972_RS01025 WP_114866111.1 160924..161205(+) (comYC) [Streptococcus suis strain NJ3]
MKKLIEVKVKGFTLVEMLVVLGIISLLLLLFVPNLSQQKDAIQKKGDAAVVKVVESQMELYELEYDKEATVADLQAAGYI
TQKQAEQYAEAKK

Nucleotide

• Length: 282 bp

>NTDB_id=599917 K6972_RS01025 WP_114866111.1 160924..161205(+) (comYC) [Streptococcus suis strain NJ3]
ATGAAAAAGTTAATTGAAGTGAAGGTAAAAGGGTTCACTCTGGTGGAAATGTTAGTCGTTTTGGGGATCATTAGCCTGCT
CTTGCTCCTCTTTGTGCCAAATTTGAGCCAGCAGAAGGATGCTATTCAGAAGAAGGGGGATGCGGCTGTTGTCAAAGTAG
TAGAGAGTCAGATGGAGCTCTATGAATTGGAATATGATAAGGAAGCAACGGTGGCAGATTTGCAGGCAGCAGGCTATATT
ACTCAAAAACAAGCGGAGCAGTATGCTGAGGCGAAAAAATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (8-30)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYC	Streptococcus suis isolate S10	91.398	100	0.914
comGC/cglC	Streptococcus pneumoniae Rx1	61.702	100	0.624
comGC/cglC	Streptococcus pneumoniae D39	61.702	100	0.624
comGC/cglC	Streptococcus pneumoniae R6	61.702	100	0.624
comGC/cglC	Streptococcus pneumoniae TIGR4	61.702	100	0.624
comGC/cglC	Streptococcus mitis NCTC 12261	61.702	100	0.624
comGC/cglC	Streptococcus mitis SK321	61.702	100	0.624
comYC	Streptococcus gordonii str. Challis substr. CH1	64.045	95.699	0.613
comYC	Streptococcus mutans UA140	61.111	96.774	0.591
comYC	Streptococcus mutans UA159	61.111	96.774	0.591
comGC	Lactococcus lactis subsp. cremoris KW2	56.667	96.774	0.548
comGC	Staphylococcus aureus N315	47.436	83.871	0.398
comGC	Staphylococcus aureus MW2	47.436	83.871	0.398
comGC	Latilactobacillus sakei subsp. sakei 23K	42.169	89.247	0.376
comGC	Bacillus subtilis subsp. subtilis str. 168	48.611	77.419	0.376