NTDB

Overview

Name	comYE	Type	Machinery gene
Locus tag	K6972_RS01035	Genome accession	NZ_CP082203
Coordinates	161565..161858 (+)	Length	97 a.a.
NCBI ID	WP_205026479.1	Uniprot ID	-
Organism	Streptococcus suis strain NJ3
Function	dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 156565..166858

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6972_RS00990 (K6972_00990)	-	157564..157827 (+)	264	WP_024410576.1	hypothetical protein	-
K6972_RS00995 (K6972_00995)	-	157840..158295 (+)	456	WP_016056164.1	hypothetical protein	-
K6972_RS01000 (K6972_01000)	-	158270..158473 (+)	204	WP_016056163.1	putative holin protein	-
K6972_RS01005 (K6972_01005)	-	158603..159313 (+)	711	WP_016056162.1	CHAP domain-containing protein	-
K6972_RS01010 (K6972_01010)	prx	159461..159646 (+)	186	WP_016056161.1	hypothetical protein	Regulator
K6972_RS01015 (K6972_01015)	-	159671..159973 (+)	303	Protein_168	ATPase, T2SS/T4P/T4SS family	-
K6972_RS01020 (K6972_01020)	comYB	159885..160922 (+)	1038	WP_261984178.1	competence type IV pilus assembly protein ComGB	Machinery gene
K6972_RS01025 (K6972_01025)	comYC	160924..161205 (+)	282	WP_114866111.1	competence type IV pilus major pilin ComGC	Machinery gene
K6972_RS01030 (K6972_01030)	comGD	161186..161593 (+)	408	WP_114866112.1	competence type IV pilus minor pilin ComGD	-
K6972_RS01035 (K6972_01035)	comYE	161565..161858 (+)	294	WP_205026479.1	competence type IV pilus minor pilin ComGE	Machinery gene
K6972_RS01040 (K6972_01040)	comGF/cglF	161845..162279 (+)	435	WP_024407345.1	competence type IV pilus minor pilin ComGF	Machinery gene
K6972_RS01045 (K6972_01045)	comGG	162257..162667 (+)	411	WP_114866114.1	competence type IV pilus minor pilin ComGG	-
K6972_RS01050 (K6972_01050)	comYH	162724..163677 (+)	954	WP_024414316.1	class I SAM-dependent methyltransferase	Machinery gene
K6972_RS01055 (K6972_01055)	-	163727..164914 (+)	1188	WP_114866116.1	acetate kinase	-
K6972_RS01060 (K6972_01060)	-	165230..165781 (+)	552	WP_074391332.1	folate family ECF transporter S component	-

Sequence

Protein

Download Length: 97 a.a. Molecular weight: 10831.74 Da Isoelectric Point: 9.0978

                                >NTDB_id=599918 K6972_RS01035 WP_205026479.1 161565..161858(+) (comYE) [Streptococcus suis strain NJ3]

MVAIRKQKNKAYILLESLIALATLVTICSLILSAVDAGRRRQAWELEQQEVLNLAQMAVQTEQDNLALNGVTVQVQRTAD

KMIVFHEGKEVLSVVKK

Nucleotide

Download Length: 294 bp

                                >NTDB_id=599918 K6972_RS01035 WP_205026479.1 161565..161858(+) (comYE) [Streptococcus suis strain NJ3]

GTGGTCGCTATAAGAAAACAGAAAAATAAGGCTTATATCTTGCTAGAAAGTCTGATTGCACTTGCGACCCTAGTGACTAT

TTGTAGCTTGATTTTGTCAGCTGTGGATGCAGGTCGTAGGCGACAAGCTTGGGAATTGGAACAACAGGAGGTTCTCAATC

TAGCACAGATGGCTGTTCAGACCGAGCAAGATAACCTAGCCTTAAACGGTGTTACAGTTCAGGTTCAACGAACAGCAGAT

AAGATGATTGTTTTCCACGAGGGAAAGGAGGTTTTATCGGTTGTTAAAAAGTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comYE	Streptococcus mutans UA140	53.608	100	0.536
comYE	Streptococcus mutans UA159	53.608	100	0.536
comGE/cglE	Streptococcus pneumoniae Rx1	39.13	94.845	0.371
comGE/cglE	Streptococcus pneumoniae D39	39.13	94.845	0.371
comGE/cglE	Streptococcus pneumoniae R6	39.13	94.845	0.371
comGE/cglE	Streptococcus pneumoniae TIGR4	39.13	94.845	0.371
comGE/cglE	Streptococcus mitis SK321	38.043	94.845	0.361
comGE/cglE	Streptococcus mitis NCTC 12261	38.043	94.845	0.361
comGE	Lactococcus lactis subsp. cremoris KW2	38.043	94.845	0.361

Detailed information NTG0599918