Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   EGT72_RS14270 Genome accession   NZ_CP079792
Coordinates   2871660..2872088 (-) Length   142 a.a.
NCBI ID   WP_125280907.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ_082     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2866660..2877088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGT72_RS14255 (EGT72_014255) - 2866713..2866907 (+) 195 WP_010327639.1 bacterioferritin-associated ferredoxin -
  EGT72_RS14260 (EGT72_014260) bfr 2867146..2867610 (+) 465 WP_125280909.1 bacterioferritin -
  EGT72_RS14265 (EGT72_014265) - 2867948..2871592 (-) 3645 WP_125280908.1 fused MFS/spermidine synthase -
  EGT72_RS14270 (EGT72_014270) pilE 2871660..2872088 (-) 429 WP_125280907.1 pilin Machinery gene
  EGT72_RS14275 (EGT72_014275) - 2872296..2872856 (-) 561 WP_125280906.1 TPM domain-containing protein -
  EGT72_RS14280 (EGT72_014280) - 2872850..2873923 (-) 1074 WP_125280905.1 TPM domain-containing protein -
  EGT72_RS14285 (EGT72_014285) - 2873961..2874551 (-) 591 WP_125280904.1 LemA family protein -
  EGT72_RS14290 (EGT72_014290) - 2874723..2875580 (-) 858 Protein_2776 metal-dependent hydrolase -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 14370.43 Da        Isoelectric Point: 8.4553

>NTDB_id=589531 EGT72_RS14270 WP_125280907.1 2871660..2872088(-) (pilE) [Acinetobacter johnsonii strain AJ_082]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQDYIARAQVTEAVTLASGQKAAVTEVRANTGAWPTSNAQAGIAASTDITG
KYVSYVQVGASGVVTATLRGSGVASPIASGTVVLTPTEASGAYTWACSSSLSAKYLPQACRS

Nucleotide


Download         Length: 429 bp        

>NTDB_id=589531 EGT72_RS14270 WP_125280907.1 2871660..2872088(-) (pilE) [Acinetobacter johnsonii strain AJ_082]
ATGAATGCTCAAAAAGGTTTTACCTTAATTGAATTAATGATTGTTGTTGCAATTATCGGTATTCTTGCTGCGATTGCGAT
TCCTGCTTATCAAGATTATATTGCTCGTGCACAAGTAACAGAAGCTGTAACTTTGGCTAGTGGTCAAAAAGCAGCAGTAA
CAGAAGTACGTGCTAATACTGGCGCTTGGCCTACTTCTAATGCACAAGCAGGTATTGCAGCTTCTACAGATATTACAGGT
AAATATGTATCATATGTTCAAGTTGGTGCTAGTGGTGTAGTCACTGCGACACTTCGTGGTTCAGGTGTTGCATCTCCAAT
TGCATCAGGTACGGTTGTATTAACACCAACAGAAGCGAGTGGTGCATATACGTGGGCTTGTTCATCAAGTCTATCTGCGA
AATATTTGCCGCAAGCTTGTCGTTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

49.689

100

0.563
  pilE Neisseria gonorrhoeae strain FA1090

48.125

100

0.542
  comP Acinetobacter baylyi ADP1

46.753

100

0.507
  pilA2 Legionella pneumophila str. Paris

50.714

98.592

0.5
  pilA2 Legionella pneumophila strain ERS1305867

50

98.592

0.493
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

35.87

100

0.465
  pilA Ralstonia pseudosolanacearum GMI1000

40.491

100

0.465
  pilA Acinetobacter baumannii strain A118

45.455

100

0.458
  pilA/pilA1 Eikenella corrodens VA1

41.667

100

0.458
  pilA Acinetobacter nosocomialis M2

44.755

100

0.451
  pilA Pseudomonas aeruginosa PAK

40.397

100

0.43
  pilA/pilAI Pseudomonas stutzeri DSM 10701

43.478

97.183

0.423
  pilA Vibrio campbellii strain DS40M4

43.165

97.887

0.423
  pilA/pilAII Pseudomonas stutzeri DSM 10701

37.589

99.296

0.373