Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   STO1_RS01760 Genome accession   NZ_AP018338
Coordinates   348747..349343 (-) Length   198 a.a.
NCBI ID   WP_007520634.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. tigurinus strain osk_001     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 343747..354343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STO1_RS09860 (STO1_003410) - 345157..345492 (+) 336 WP_231870003.1 hypothetical protein -
  STO1_RS09865 (STO1_003420) - 345544..345837 (+) 294 WP_231870004.1 IS30 family transposase -
  STO1_RS01745 - 345847..346215 (-) 369 Protein_345 transposase -
  STO1_RS01755 (STO1_003440) pbp1a 346573..348750 (-) 2178 WP_084939319.1 penicillin-binding protein PBP1A -
  STO1_RS01760 (STO1_003450) recU 348747..349343 (-) 597 WP_007520634.1 Holliday junction resolvase RecU Machinery gene
  STO1_RS01765 (STO1_003460) - 349410..349937 (+) 528 WP_007520633.1 SLOG family protein -
  STO1_RS01770 (STO1_003470) gpsB 350009..350335 (+) 327 WP_007520632.1 cell division regulator GpsB -
  STO1_RS01780 (STO1_003480) - 350823..351995 (+) 1173 WP_084917717.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  STO1_RS01785 (STO1_003490) mapZ 351992..353434 (+) 1443 WP_061588438.1 cell division site-positioning protein MapZ -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23130.46 Da        Isoelectric Point: 9.9237

>NTDB_id=58045 STO1_RS01760 WP_007520634.1 348747..349343(-) (recU) [Streptococcus oralis subsp. tigurinus strain osk_001]
MVNYPHKISSQKRQAPPSQTKNFANRGMSFEKMINATNDYYLSHGLAVIHKKPTPIQIVRVDYPQRSRAKIVEAYFRQAS
TTDYSGVYDGYYIDFEAKETRQRNAIPMKNFHHHQIQHMEQVLAQRGICFVLLHFASQQETYLLPAIDLIRFYHQDRGQK
SMPLGYIRENGYRIEPGAFPQIPYLDIIKEHLLGGKTR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=58045 STO1_RS01760 WP_007520634.1 348747..349343(-) (recU) [Streptococcus oralis subsp. tigurinus strain osk_001]
ATGGTCAACTATCCACATAAAATTTCATCACAGAAGAGACAAGCTCCCCCGTCACAAACTAAAAATTTCGCAAATCGGGG
AATGTCTTTTGAAAAGATGATCAACGCTACGAACGACTACTATTTGTCACATGGGCTAGCAGTGATTCACAAGAAACCAA
CTCCCATCCAAATCGTACGTGTCGACTATCCCCAACGAAGTCGAGCTAAGATCGTTGAAGCCTACTTCAGACAAGCTTCA
ACCACAGACTATTCAGGGGTTTATGATGGATATTACATCGACTTTGAAGCAAAGGAAACTAGGCAAAGAAATGCAATTCC
GATGAAGAATTTCCATCACCATCAGATTCAGCATATGGAACAGGTCCTTGCTCAGCGAGGAATCTGCTTTGTCCTTCTTC
ACTTTGCTTCTCAGCAAGAAACTTATTTATTGCCGGCCATTGACTTGATTCGTTTCTATCATCAAGATAGGGGACAAAAG
TCAATGCCACTTGGATATATTCGAGAAAATGGATATAGGATTGAGCCTGGTGCCTTTCCCCAGATTCCCTATCTCGATAT
TATCAAAGAACATTTACTAGGTGGTAAAACAAGATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(26-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.515

100

0.495

Multiple sequence alignment