Detailed information
Bioinformatically predicted
Overview
| Name | comE1/comEA | Type | Machinery gene |
| Locus tag | KM147_RS03830 | Genome accession | NZ_CP076258 |
| Coordinates | 890401..890649 (+) | Length | 82 a.a. |
| NCBI ID | WP_233102486.1 | Uniprot ID | - |
| Organism | Providencia rettgeri strain W986 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 885401..895649
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KM147_RS03820 (KM147_03820) | hupB | 887812..888087 (+) | 276 | WP_004914513.1 | nucleoid-associated protein HU-beta | - |
| KM147_RS03825 (KM147_03825) | ppiD | 888263..890134 (+) | 1872 | WP_042846904.1 | peptidylprolyl isomerase | - |
| KM147_RS03830 (KM147_03830) | comE1/comEA | 890401..890649 (+) | 249 | WP_233102486.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| KM147_RS03835 (KM147_03835) | - | 890845..891273 (+) | 429 | WP_131680450.1 | thioesterase family protein | - |
| KM147_RS03840 (KM147_03840) | queC | 891315..892016 (-) | 702 | WP_198861145.1 | 7-cyano-7-deazaguanine synthase QueC | - |
| KM147_RS03845 (KM147_03845) | - | 892295..892756 (+) | 462 | WP_042846899.1 | Lrp/AsnC family transcriptional regulator | - |
| KM147_RS03850 (KM147_03850) | - | 892832..894400 (+) | 1569 | Protein_752 | SmdA family multidrug ABC transporter permease/ATP-binding protein | - |
| KM147_RS03855 (KM147_03855) | - | 894394..895398 (+) | 1005 | Protein_753 | ATP-binding cassette domain-containing protein | - |
Sequence
Protein
Download Length: 82 a.a. Molecular weight: 9024.26 Da Isoelectric Point: 9.5415
>NTDB_id=574129 KM147_RS03830 WP_233102486.1 890401..890649(+) (comE1/comEA) [Providencia rettgeri strain W986]
MQKKASNENSQLISSEQSDKVNINSASVDELAQKLSGIGKQKAKAIVEYRQKYGAFNSIENILEVQGIGPAFLEKNKDKI
VL
MQKKASNENSQLISSEQSDKVNINSASVDELAQKLSGIGKQKAKAIVEYRQKYGAFNSIENILEVQGIGPAFLEKNKDKI
VL
Nucleotide
Download Length: 249 bp
>NTDB_id=574129 KM147_RS03830 WP_233102486.1 890401..890649(+) (comE1/comEA) [Providencia rettgeri strain W986]
GTGCAAAAAAAAGCGTCAAATGAAAACTCACAACTCATATCTTCAGAGCAATCAGACAAAGTCAATATTAATTCAGCAAG
TGTAGATGAGCTAGCACAAAAGCTGAGTGGCATCGGCAAGCAAAAAGCGAAAGCAATTGTTGAATATAGGCAAAAGTATG
GGGCTTTTAATTCAATTGAAAATATTCTAGAAGTTCAGGGGATAGGGCCTGCATTTTTAGAGAAAAATAAAGATAAAATT
GTACTGTAG
GTGCAAAAAAAAGCGTCAAATGAAAACTCACAACTCATATCTTCAGAGCAATCAGACAAAGTCAATATTAATTCAGCAAG
TGTAGATGAGCTAGCACAAAAGCTGAGTGGCATCGGCAAGCAAAAAGCGAAAGCAATTGTTGAATATAGGCAAAAGTATG
GGGCTTTTAATTCAATTGAAAATATTCTAGAAGTTCAGGGGATAGGGCCTGCATTTTTAGAGAAAAATAAAGATAAAATT
GTACTGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE1/comEA | Haemophilus influenzae Rd KW20 |
45.055 |
100 |
0.5 |
| comEA | Acinetobacter baumannii strain A118 |
45.238 |
100 |
0.463 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
58.065 |
75.61 |
0.439 |
| comEA | Acinetobacter baylyi ADP1 |
57.143 |
76.829 |
0.439 |
| comEA | Lactococcus lactis subsp. cremoris KW2 |
51.471 |
82.927 |
0.427 |
| comE | Neisseria gonorrhoeae MS11 |
58.621 |
70.732 |
0.415 |
| comE | Neisseria gonorrhoeae MS11 |
58.621 |
70.732 |
0.415 |
| comE | Neisseria gonorrhoeae MS11 |
58.621 |
70.732 |
0.415 |
| comE | Neisseria gonorrhoeae MS11 |
58.621 |
70.732 |
0.415 |
| comEA | Acinetobacter baumannii D1279779 |
50 |
82.927 |
0.415 |
| comEA | Vibrio cholerae C6706 |
50 |
75.61 |
0.378 |
| comEA | Vibrio cholerae strain A1552 |
50 |
75.61 |
0.378 |
| Cj0011c | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
48.387 |
75.61 |
0.366 |
| comEA | Vibrio campbellii strain DS40M4 |
48.387 |
75.61 |
0.366 |
| comEA | Bacillus subtilis subsp. subtilis str. 168 |
48.387 |
75.61 |
0.366 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
48.387 |
75.61 |
0.366 |