Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   KCL43_RS08960 Genome accession   NZ_CP073275
Coordinates   1858521..1859006 (-) Length   161 a.a.
NCBI ID   WP_165623215.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain IN-6992     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1853521..1864006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCL43_RS08925 (KCL43_08925) - 1853868..1854629 (-) 762 WP_323126150.1 class I SAM-dependent methyltransferase -
  KCL43_RS08930 (KCL43_08930) rsfS 1854741..1855094 (-) 354 WP_042671284.1 ribosome silencing factor -
  KCL43_RS08935 (KCL43_08935) yqeK 1855096..1855689 (-) 594 WP_012677396.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  KCL43_RS08940 (KCL43_08940) - 1855686..1856318 (-) 633 WP_043026538.1 nicotinate-nucleotide adenylyltransferase -
  KCL43_RS08945 (KCL43_08945) yhbY 1856402..1856710 (-) 309 WP_012516273.1 ribosome assembly RNA-binding protein YhbY -
  KCL43_RS08950 (KCL43_08950) yqeH 1856737..1857855 (-) 1119 WP_111692756.1 ribosome biogenesis GTPase YqeH -
  KCL43_RS08955 (KCL43_08955) - 1857855..1858382 (-) 528 WP_037579990.1 YqeG family HAD IIIA-type phosphatase -
  KCL43_RS08960 (KCL43_08960) comX/sigX/comX2/sigX2 1858521..1859006 (-) 486 WP_165623215.1 competence protein ComX Regulator

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 19359.34 Da        Isoelectric Point: 8.2702

>NTDB_id=558798 KCL43_RS08960 WP_165623215.1 1858521..1859006(-) (comX/sigX/comX2/sigX2) [Streptococcus equi subsp. zooepidemicus strain IN-6992]
MSDDLVRLFDKIKPIIMKLRRHYYIQLWELDDWLQEGRLILYRLLVTYPELIEDEEKLYRYFKTKFSSYLKDVLRQQESQ
KRRFHKMAYEEIGSVGHAIPAGGLGVDDYVAYQLIVKEVEERLTEGELSQFRALIRGERFEGRRALLRKIGPYFQDFTGE
K

Nucleotide


Download         Length: 486 bp        

>NTDB_id=558798 KCL43_RS08960 WP_165623215.1 1858521..1859006(-) (comX/sigX/comX2/sigX2) [Streptococcus equi subsp. zooepidemicus strain IN-6992]
ATGAGTGATGATTTAGTGAGGTTATTTGATAAGATCAAGCCTATTATTATGAAGCTAAGACGGCATTATTATATTCAGCT
GTGGGAGCTAGATGATTGGTTACAGGAGGGGCGGTTGATCTTGTATCGGTTATTGGTCACTTATCCAGAATTGATAGAGG
ATGAGGAGAAGCTGTATCGTTATTTTAAGACCAAGTTTTCCTCTTATTTGAAGGACGTGTTGCGGCAGCAGGAGAGTCAG
AAGCGTCGGTTTCATAAGATGGCTTATGAGGAGATTGGGTCGGTAGGCCATGCGATACCAGCAGGTGGTTTGGGAGTAGA
TGATTATGTGGCTTATCAGTTGATTGTGAAGGAGGTTGAGGAGCGATTGACAGAGGGTGAGCTGTCGCAGTTTCGGGCTT
TGATCAGGGGAGAGCGGTTTGAGGGGAGACGGGCCTTGCTTCGCAAGATAGGACCTTACTTTCAGGACTTTACTGGTGAG
AAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

68.125

99.379

0.677
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

68.125

99.379

0.677
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

68.125

99.379

0.677
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

68.125

99.379

0.677
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

68.125

99.379

0.677
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

68.125

99.379

0.677
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

47.742

96.273

0.46
  comX/sigX Streptococcus mutans UA159

46.497

97.516

0.453
  comX Streptococcus sobrinus strain NIDR 6715-7

45.752

95.031

0.435
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

40.667

93.168

0.379
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

40.397

93.789

0.379
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

40.397

93.789

0.379
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

39.333

93.168

0.366
  comX/comX2 Streptococcus pneumoniae TIGR4

38.411

93.789

0.36
  comX/comX1 Streptococcus pneumoniae TIGR4

38.411

93.789

0.36
  comX/comX2 Streptococcus pneumoniae Rx1

38.411

93.789

0.36
  comX/comX1 Streptococcus pneumoniae Rx1

38.411

93.789

0.36
  comX/comX2 Streptococcus pneumoniae D39

38.411

93.789

0.36
  comX/comX1 Streptococcus pneumoniae D39

38.411

93.789

0.36
  comX/comX2 Streptococcus pneumoniae R6

38.411

93.789

0.36
  comX/comX1 Streptococcus pneumoniae R6

38.411

93.789

0.36
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

38.667

93.168

0.36
  comX Streptococcus thermophilus LMG 18311

37.908

95.031

0.36
  comX Streptococcus thermophilus LMD-9

37.908

95.031

0.36