Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   XCM_RS06510 Genome accession   NZ_CP073209
Coordinates   1463801..1464229 (+) Length   142 a.a.
NCBI ID   WP_005921364.1    Uniprot ID   -
Organism   Xanthomonas citri pv. mangiferaeindicae strain GXG07     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1458801..1469229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XCM_RS06490 (XCM_6395) - 1459645..1460607 (-) 963 WP_226690035.1 IS1595-like element IS1595 family transposase -
  XCM_RS06495 (XCM_6400) coaE 1460705..1461313 (-) 609 WP_003491178.1 dephospho-CoA kinase -
  XCM_RS06500 (XCM_6405) - 1461327..1462190 (-) 864 WP_003491180.1 A24 family peptidase -
  XCM_RS06505 (XCM_6410) pilC 1462197..1463456 (-) 1260 WP_033483308.1 type II secretion system F family protein Machinery gene
  XCM_RS06510 (XCM_6415) comP 1463801..1464229 (+) 429 WP_005921364.1 pilin Machinery gene
  XCM_RS22920 (XCM_6420) pilA2 1464326..1464739 (+) 414 WP_005921365.1 pilin Machinery gene
  XCM_RS06525 (XCM_6425) pilB 1464781..1466517 (+) 1737 WP_033482835.1 type IV-A pilus assembly ATPase PilB Machinery gene
  XCM_RS06530 (XCM_6430) pilB 1466614..1466733 (+) 120 WP_033482837.1 hypothetical protein Machinery gene
  XCM_RS06535 (XCM_6435) - 1466865..1467020 (+) 156 WP_003488595.1 hypothetical protein -
  XCM_RS06540 (XCM_6440) pilR 1467218..1468612 (-) 1395 WP_003488597.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 14513.65 Da        Isoelectric Point: 8.4798

>NTDB_id=558297 XCM_RS06510 WP_005921364.1 1463801..1464229(+) (comP) [Xanthomonas citri pv. mangiferaeindicae strain GXG07]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTIRSRVSELAVMASSFKTTVAENIANNGGTLPADACVGVGATAATTN
MASIACTPATGNIVVTGDATRTKGTVLTYAPTVGGANSAVGTTWTCTGSGSQSKYYPAECRR

Nucleotide


Download         Length: 429 bp        

>NTDB_id=558297 XCM_RS06510 WP_005921364.1 1463801..1464229(+) (comP) [Xanthomonas citri pv. mangiferaeindicae strain GXG07]
ATGAAGAAGCAACAAGGCTTTACCCTGATCGAATTGATGATCGTTGTTGCGATCATCGCAATCCTGGCCGCCATTGCTCT
TCCGGCTTATCAGGACTACACCATTCGCTCGCGTGTTTCGGAACTGGCCGTGATGGCTAGCTCCTTTAAGACGACCGTTG
CGGAAAACATCGCCAACAACGGCGGCACCCTGCCAGCTGACGCTTGCGTCGGCGTTGGTGCTACCGCTGCGACCACTAAT
ATGGCTTCCATCGCTTGCACTCCCGCGACTGGCAACATCGTCGTAACCGGCGATGCAACTCGGACCAAGGGCACCGTTTT
GACCTATGCTCCGACAGTGGGCGGTGCTAACTCGGCGGTTGGTACCACTTGGACCTGCACCGGCAGTGGTAGCCAGTCCA
AGTACTATCCGGCCGAGTGCCGCCGCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-141)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

54.305

100

0.577
  pilA2 Legionella pneumophila str. Paris

55.319

99.296

0.549
  pilA2 Legionella pneumophila strain ERS1305867

54.61

99.296

0.542
  pilA Ralstonia pseudosolanacearum GMI1000

41.463

100

0.479
  pilA Pseudomonas aeruginosa PAK

37.58

100

0.415
  pilA/pilA1 Eikenella corrodens VA1

38.411

100

0.408
  pilE Neisseria gonorrhoeae strain FA1090

34.94

100

0.408
  pilA/pilAII Pseudomonas stutzeri DSM 10701

40.278

100

0.408
  pilA/pilAI Pseudomonas stutzeri DSM 10701

40.559

100

0.408
  pilA Haemophilus influenzae 86-028NP

38.971

95.775

0.373
  pilA Vibrio parahaemolyticus RIMD 2210633

40.31

90.845

0.366