Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   XCM_RS06505 Genome accession   NZ_CP073209
Coordinates   1462197..1463456 (-) Length   419 a.a.
NCBI ID   WP_033483308.1    Uniprot ID   -
Organism   Xanthomonas citri pv. mangiferaeindicae strain GXG07     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1457197..1468456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XCM_RS06490 (XCM_6395) - 1459645..1460607 (-) 963 WP_226690035.1 IS1595-like element IS1595 family transposase -
  XCM_RS06495 (XCM_6400) coaE 1460705..1461313 (-) 609 WP_003491178.1 dephospho-CoA kinase -
  XCM_RS06500 (XCM_6405) - 1461327..1462190 (-) 864 WP_003491180.1 A24 family peptidase -
  XCM_RS06505 (XCM_6410) pilC 1462197..1463456 (-) 1260 WP_033483308.1 type II secretion system F family protein Machinery gene
  XCM_RS06510 (XCM_6415) comP 1463801..1464229 (+) 429 WP_005921364.1 pilin Machinery gene
  XCM_RS22920 (XCM_6420) pilA2 1464326..1464739 (+) 414 WP_005921365.1 pilin Machinery gene
  XCM_RS06525 (XCM_6425) pilB 1464781..1466517 (+) 1737 WP_033482835.1 type IV-A pilus assembly ATPase PilB Machinery gene
  XCM_RS06530 (XCM_6430) pilB 1466614..1466733 (+) 120 WP_033482837.1 hypothetical protein Machinery gene
  XCM_RS06535 (XCM_6435) - 1466865..1467020 (+) 156 WP_003488595.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45904.39 Da        Isoelectric Point: 10.3006

>NTDB_id=558296 XCM_RS06505 WP_033483308.1 1462197..1463456(-) (pilC) [Xanthomonas citri pv. mangiferaeindicae strain GXG07]
MSVARNVIKKQPADRSNSQMQPFVWEGTDKRGIKMKGEQAARNVNMLRAELRRQGITPTVVKPKPKPLFGAAGKKVGPKD
IAFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMRKMVGQIRTDIEGGSSLHEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKALFYPAMVVAVALIVSAILLIFVVPQFEEVFKGFGAELPAFTQMIVAASRFMISYWWL
MLLVIGGAITGFIFAYKRSPRMQHGMDRLVLKVPVIGQIMYNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=558296 XCM_RS06505 WP_033483308.1 1462197..1463456(-) (pilC) [Xanthomonas citri pv. mangiferaeindicae strain GXG07]
ATGTCAGTCGCGCGTAACGTAATCAAAAAACAGCCAGCCGACCGAAGCAACAGCCAGATGCAGCCTTTTGTATGGGAGGG
GACGGATAAGCGTGGCATCAAGATGAAAGGGGAGCAGGCGGCGCGCAATGTGAACATGTTGCGTGCAGAGCTTCGTCGCC
AGGGCATTACGCCCACTGTCGTCAAGCCCAAGCCCAAACCACTTTTTGGCGCTGCCGGCAAAAAAGTGGGCCCTAAGGAC
ATTGCGTTTTTCAGTCGTCAGATGGCAACTATGATGAAGTCCGGCGTTCCCATCGTAGGATCGCTTGAGATCATTGGCGA
GGGGCACAAAAACCCACGAATGAGGAAAATGGTCGGCCAGATAAGGACCGACATTGAAGGCGGCTCTTCACTGCATGAAG
CGATCAGCAAGCATCCGGTACAGTTTGACGAGCTCTACCGCAACCTTGTCCGCGCGGGAGAGGGCGCAGGCGTGCTGGAG
ACAGTCTTAGACACAGTCGCCAATTACAAAGAAAACATTGAGGCCTTGAAAGGCAAGATCAAGAAGGCGCTCTTCTACCC
CGCAATGGTCGTTGCAGTCGCCCTCATTGTTAGCGCCATCTTGCTCATTTTTGTTGTTCCACAGTTCGAAGAAGTCTTCA
AAGGGTTTGGAGCCGAACTTCCCGCGTTCACACAGATGATCGTTGCGGCATCTCGCTTCATGATCAGCTACTGGTGGCTA
ATGCTGCTCGTCATCGGTGGCGCGATTACCGGCTTCATCTTCGCTTACAAGCGCTCACCTCGCATGCAACATGGCATGGA
TCGCCTGGTCTTGAAGGTGCCTGTCATCGGCCAAATTATGTATAACAGTTCCATTGCAAGGTTTGCGCGCACGACCGCCG
TGACCTTCAAGGCTGGCGTTCCGCTCGTGGAAGCACTCGGCATTGTTGCGGGGGCGACTGGTAACAAAGTTTATGAAGAA
GCAGTGCTGCGCATGCGTGACGACGTATCGGTGGGCTATCCAGTCAACATGGCCATGAAGCAGGTCAACCTGTTCCCACA
CATGGTTATTCAAATGACTGCGATTGGCGAGGAAGCAGGCGCACTGGATGCCATGCTGTTTAAGGTTGCTGAGTATTTCG
AGCAGGAGGTCAACAATGCCGTGGATGCGTTGAGCAGCCTGCTTGAACCAATGATCATGGTGTTCATCGGCACCATCGTC
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.545

94.511

0.516
  pilC Acinetobacter baylyi ADP1

53.218

96.42

0.513
  pilC Legionella pneumophila strain ERS1305867

51.605

96.659

0.499
  pilC Acinetobacter baumannii D1279779

51.485

96.42

0.496
  pilG Neisseria gonorrhoeae MS11

44.638

95.704

0.427
  pilG Neisseria meningitidis 44/76-A

44.14

95.704

0.422
  pilC Vibrio cholerae strain A1552

41.5

95.465

0.396
  pilC Vibrio campbellii strain DS40M4

39.702

96.181

0.382
  pilC Thermus thermophilus HB27

37.905

95.704

0.363