Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   XCM_RS06530 Genome accession   NZ_CP073209
Coordinates   1466614..1466733 (+) Length   39 a.a.
NCBI ID   WP_033482837.1    Uniprot ID   -
Organism   Xanthomonas citri pv. mangiferaeindicae strain GXG07     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1461614..1471733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XCM_RS06505 (XCM_6410) pilC 1462197..1463456 (-) 1260 WP_033483308.1 type II secretion system F family protein Machinery gene
  XCM_RS06510 (XCM_6415) comP 1463801..1464229 (+) 429 WP_005921364.1 pilin Machinery gene
  XCM_RS22920 (XCM_6420) pilA2 1464326..1464739 (+) 414 WP_005921365.1 pilin Machinery gene
  XCM_RS06525 (XCM_6425) pilB 1464781..1466517 (+) 1737 WP_033482835.1 type IV-A pilus assembly ATPase PilB Machinery gene
  XCM_RS06530 (XCM_6430) pilB 1466614..1466733 (+) 120 WP_033482837.1 hypothetical protein Machinery gene
  XCM_RS06535 (XCM_6435) - 1466865..1467020 (+) 156 WP_003488595.1 hypothetical protein -
  XCM_RS06540 (XCM_6440) pilR 1467218..1468612 (-) 1395 WP_003488597.1 sigma-54 dependent transcriptional regulator Regulator
  XCM_RS06545 (XCM_6445) - 1468941..1470554 (-) 1614 WP_003488599.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4205.86 Da        Isoelectric Point: 9.0113

>NTDB_id=558299 XCM_RS06530 WP_033482837.1 1466614..1466733(+) (pilB) [Xanthomonas citri pv. mangiferaeindicae strain GXG07]
MQIAEAAQAIGIRDLRQSALMKAAHGVTNLAEINRVTKD

Nucleotide


Download         Length: 120 bp        

>NTDB_id=558299 XCM_RS06530 WP_033482837.1 1466614..1466733(+) (pilB) [Xanthomonas citri pv. mangiferaeindicae strain GXG07]
ATGCAGATCGCCGAGGCCGCACAGGCGATCGGTATCCGCGATTTGCGGCAGTCGGCGTTGATGAAGGCTGCGCACGGGGT
GACCAACCTGGCGGAGATCAATCGTGTGACGAAGGACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baylyi ADP1

48.718

100

0.487
  pilB Acinetobacter baumannii D1279779

46.154

100

0.462
  pilB Legionella pneumophila strain ERS1305867

38.462

100

0.385
  pilB Vibrio cholerae strain A1552

42.857

89.744

0.385