Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   XCM_RS06540 Genome accession   NZ_CP073209
Coordinates   1467218..1468612 (-) Length   464 a.a.
NCBI ID   WP_003488597.1    Uniprot ID   -
Organism   Xanthomonas citri pv. mangiferaeindicae strain GXG07     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1462218..1473612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XCM_RS06510 (XCM_6415) comP 1463801..1464229 (+) 429 WP_005921364.1 pilin Machinery gene
  XCM_RS22920 (XCM_6420) pilA2 1464326..1464739 (+) 414 WP_005921365.1 pilin Machinery gene
  XCM_RS06525 (XCM_6425) pilB 1464781..1466517 (+) 1737 WP_033482835.1 type IV-A pilus assembly ATPase PilB Machinery gene
  XCM_RS06530 (XCM_6430) pilB 1466614..1466733 (+) 120 WP_033482837.1 hypothetical protein Machinery gene
  XCM_RS06535 (XCM_6435) - 1466865..1467020 (+) 156 WP_003488595.1 hypothetical protein -
  XCM_RS06540 (XCM_6440) pilR 1467218..1468612 (-) 1395 WP_003488597.1 sigma-54 dependent transcriptional regulator Regulator
  XCM_RS06545 (XCM_6445) - 1468941..1470554 (-) 1614 WP_003488599.1 HAMP domain-containing sensor histidine kinase -
  XCM_RS06550 (XCM_6450) sucC 1470786..1471955 (+) 1170 WP_003488601.1 ADP-forming succinate--CoA ligase subunit beta -
  XCM_RS06555 (XCM_6455) sucD 1471980..1472855 (+) 876 WP_005921370.1 succinate--CoA ligase subunit alpha -
  XCM_RS22970 - 1473056..1473255 (+) 200 Protein_1281 hypothetical protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50147.60 Da        Isoelectric Point: 6.5718

>NTDB_id=558300 XCM_RS06540 WP_003488597.1 1467218..1468612(-) (pilR) [Xanthomonas citri pv. mangiferaeindicae strain GXG07]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMEILRATISKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGESLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAAPPGGAA
AEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=558300 XCM_RS06540 WP_003488597.1 1467218..1468612(-) (pilR) [Xanthomonas citri pv. mangiferaeindicae strain GXG07]
ATGAACGAACCCAAAAGCGCCCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCAT
GGGCCTGCGCATCAGCACTGCTGCCAACCTGGCCGAAGCGCGCGAGTTGCTGGCCAACAATCCCTACGATCTGTGCCTGA
CCGACATGCGTTTGCCGGACGGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTATCCGCAGACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCCGTGGAAGCACTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGT
CGACATCGGCGTACTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCGCCACCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTCGGCGACTCCAGTGCCATGGAAATCCTGCGCGCCACCATCAGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGC
ACGTGCCGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCATGGAGGCACGCTGTTTCTGGAC
GAAGTGGCCGAATTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGACCGGTCGGCGC
ATCCGGCGAATCGCTGGTGGATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGGCATGACCTGTACTACCGCATCAACGTGATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCG
CAGCTGGCCGCTGCCATCATCGCGCGCCTGGCGCACAGCCACGGCCGCCCCATTCCGCTGCTGACCCAATCCGCACTCGA
CGCCTTGAATCACTACGGCTTCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCTACCGACCTGCGCTTGCCCGCGCACGGCGGCCACCGGTTGGCCGCCCCCCCAGGAGGCGCCGCG
GCCGAACCGCGCGAAGCCGTCGTCGACATCGACCCCGCCTCGGCCGCGCTGCCGTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAATCGCTGGAACAAGACCAAGACTGCTGCGCAGTTGGGCATCACGTTTCGGGCGC
TGCGTTACAAGCTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491