Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   INT76_RS09850 Genome accession   NZ_CP073084
Coordinates   1962384..1962860 (+) Length   158 a.a.
NCBI ID   WP_212569677.1    Uniprot ID   -
Organism   Streptococcus oriscaviae strain HKU75     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1957384..1967860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INT76_RS09820 (INT76_09820) greA 1958279..1958761 (+) 483 WP_212570355.1 transcription elongation factor GreA -
  INT76_RS09825 (INT76_09825) yidC 1958915..1959826 (-) 912 WP_249116149.1 membrane protein insertase YidC -
  INT76_RS09830 (INT76_09830) - 1959892..1960173 (-) 282 WP_212570359.1 acylphosphatase -
  INT76_RS09835 (INT76_09835) - 1960269..1961009 (+) 741 WP_212570361.1 RNA methyltransferase -
  INT76_RS09840 (INT76_09840) - 1961056..1961538 (+) 483 WP_212570363.1 HD domain-containing protein -
  INT76_RS09845 (INT76_09845) - 1961578..1962273 (+) 696 WP_212570365.1 Bax inhibitor-1/YccA family protein -
  INT76_RS09850 (INT76_09850) comX/sigX 1962384..1962860 (+) 477 WP_212569677.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18960.65 Da        Isoelectric Point: 10.0939

>NTDB_id=557868 INT76_RS09850 WP_212569677.1 1962384..1962860(+) (comX/sigX) [Streptococcus oriscaviae strain HKU75]
MEFSRLYRKVSGIVHRARKDYYIKLWEKDDWDQEGMLVLHQLLRQHPQLASDDSSLYRYYKVKFRNHIKDVIRKQESQKR
RFDRMAHEDLDTLSHLVASPGLMNDDLVILRGMLRDYRHQLPASQQANYDQLISGGRFKGRRTMLSDLKSYLSDYKPN

Nucleotide


Download         Length: 477 bp        

>NTDB_id=557868 INT76_RS09850 WP_212569677.1 1962384..1962860(+) (comX/sigX) [Streptococcus oriscaviae strain HKU75]
ATGGAATTTTCAAGACTCTATCGGAAAGTGTCCGGCATCGTCCACCGTGCCCGCAAGGACTATTATATTAAGCTCTGGGA
AAAAGACGACTGGGACCAGGAAGGGATGCTGGTCCTCCATCAACTGCTGAGGCAACATCCCCAGTTGGCCAGCGATGATT
CCAGCCTCTATCGCTACTACAAGGTTAAGTTCAGGAATCACATCAAAGATGTCATTCGCAAACAAGAAAGTCAGAAACGC
CGGTTTGACCGCATGGCTCACGAAGACCTAGACACTCTCTCCCACCTAGTAGCCAGTCCCGGCCTTATGAACGACGACTT
GGTCATTCTTCGCGGGATGTTGCGCGACTATCGCCACCAACTTCCGGCCTCCCAACAAGCCAACTATGATCAGCTGATAA
GCGGCGGCCGCTTCAAAGGCCGCAGAACAATGCTATCGGATTTAAAAAGCTACCTCAGTGACTACAAACCTAATTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX Streptococcus suis P1/7

57.692

98.734

0.57
  comX/sigX Streptococcus suis isolate S10

57.692

98.734

0.57
  comX/sigX Streptococcus suis D9

57.692

98.734

0.57
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

47.771

99.367

0.475
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

47.771

99.367

0.475
  comX/sigX Streptococcus mutans UA159

46.104

97.468

0.449
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

43.137

96.835

0.418
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

42.484

96.835

0.411
  comX/comX1 Streptococcus pneumoniae R6

43.333

94.937

0.411
  comX/comX2 Streptococcus pneumoniae Rx1

43.333

94.937

0.411
  comX/comX1 Streptococcus pneumoniae Rx1

43.333

94.937

0.411
  comX/comX2 Streptococcus pneumoniae D39

43.333

94.937

0.411
  comX/comX1 Streptococcus pneumoniae D39

43.333

94.937

0.411
  comX/comX2 Streptococcus pneumoniae R6

43.333

94.937

0.411
  comX/comX1 Streptococcus pneumoniae TIGR4

42.667

94.937

0.405
  comX/comX2 Streptococcus pneumoniae TIGR4

42.667

94.937

0.405
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

41.176

96.835

0.399
  comX Streptococcus sobrinus strain NIDR 6715-7

41.176

96.835

0.399
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

39.869

96.835

0.386
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

38.71

98.101

0.38
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

37.975

100

0.38
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

38.71

98.101

0.38
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

39.597

94.304

0.373
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

39.597

94.304

0.373
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

39.597

94.304

0.373
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

39.597

94.304

0.373