Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   XeaCFBP3836p_RS15660 Genome accession   NZ_CP072268
Coordinates   3674333..3674743 (-) Length   136 a.a.
NCBI ID   WP_029820068.1    Uniprot ID   -
Organism   Xanthomonas euvesicatoria pv. alfalfae strain CFBP3836     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3669333..3679743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XeaCFBP3836p_RS15645 (XeaCFBP3836p_15645) pilR 3670284..3671744 (+) 1461 WP_029820066.1 sigma-54 dependent transcriptional regulator Regulator
  XeaCFBP3836p_RS15650 (XeaCFBP3836p_15650) pilB 3671959..3673695 (-) 1737 WP_014090854.1 type IV-A pilus assembly ATPase PilB Machinery gene
  XeaCFBP3836p_RS15655 (XeaCFBP3836p_15655) - 3673738..3674148 (-) 411 WP_029820067.1 pilin -
  XeaCFBP3836p_RS15660 (XeaCFBP3836p_15660) pilA 3674333..3674743 (-) 411 WP_029820068.1 pilin Machinery gene
  XeaCFBP3836p_RS15665 (XeaCFBP3836p_15665) pilC 3675077..3676333 (+) 1257 WP_014090856.1 type II secretion system F family protein Machinery gene
  XeaCFBP3836p_RS15670 (XeaCFBP3836p_15670) - 3676340..3677203 (+) 864 WP_008576868.1 A24 family peptidase -
  XeaCFBP3836p_RS15675 (XeaCFBP3836p_15675) coaE 3677217..3677822 (+) 606 WP_029820069.1 dephospho-CoA kinase -
  XeaCFBP3836p_RS15680 (XeaCFBP3836p_15680) - 3677894..3679228 (-) 1335 WP_029820070.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14258.69 Da        Isoelectric Point: 8.4764

>NTDB_id=551394 XeaCFBP3836p_RS15660 WP_029820068.1 3674333..3674743(-) (pilA) [Xanthomonas euvesicatoria pv. alfalfae strain CFBP3836]
MKKQNGFTLIELMIVIAIIAILAAIALPMYQDYVAKSQVTAGLAEINPGKTQYEVALNEGKTAVADITELGLKSPSERCT
IAPITALSATGTIECTLKGNTQVVGKKVTLTRATDGTWTCKTDALKKYAPAGCPGA

Nucleotide


Download         Length: 411 bp        

>NTDB_id=551394 XeaCFBP3836p_RS15660 WP_029820068.1 3674333..3674743(-) (pilA) [Xanthomonas euvesicatoria pv. alfalfae strain CFBP3836]
ATGAAGAAGCAAAACGGTTTTACGCTGATCGAACTTATGATCGTCATTGCAATCATCGCGATTCTGGCTGCGATTGCCCT
GCCGATGTATCAGGACTACGTCGCCAAGTCGCAGGTCACCGCCGGTCTCGCTGAAATCAATCCTGGCAAGACGCAGTACG
AAGTAGCGCTAAACGAAGGCAAGACTGCCGTTGCAGACATCACCGAGCTGGGTCTGAAGTCTCCTTCTGAGCGCTGCACC
ATTGCGCCGATCACCGCTCTGAGCGCTACCGGCACCATCGAGTGCACTCTGAAGGGGAATACGCAGGTTGTGGGTAAGAA
GGTCACGCTGACCCGTGCAACTGATGGTACCTGGACCTGCAAGACGGACGCGCTGAAGAAGTACGCGCCTGCTGGCTGCC
CGGGTGCTTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-133)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Acinetobacter baumannii strain A118

51.095

100

0.515
  pilA/pilAI Pseudomonas stutzeri DSM 10701

50.37

99.265

0.5
  pilA Pseudomonas aeruginosa PAK

43.243

100

0.471
  pilA/pilAII Pseudomonas stutzeri DSM 10701

44.03

98.529

0.434
  pilA Vibrio cholerae strain A1552

41.844

100

0.434
  pilA Vibrio cholerae C6706

41.844

100

0.434
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

41.844

100

0.434
  comP Acinetobacter baylyi ADP1

38.926

100

0.426
  pilA2 Legionella pneumophila str. Paris

41.912

100

0.419
  pilA2 Legionella pneumophila strain ERS1305867

40.441

100

0.404
  pilE Neisseria gonorrhoeae strain FA1090

38.931

96.324

0.375
  pilE Neisseria gonorrhoeae MS11

39.2

91.912

0.36