Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   XeaCFBP3836p_RS15645 Genome accession   NZ_CP072268
Coordinates   3670284..3671744 (+) Length   486 a.a.
NCBI ID   WP_029820066.1    Uniprot ID   -
Organism   Xanthomonas euvesicatoria pv. alfalfae strain CFBP3836     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3665284..3676744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XeaCFBP3836p_RS15625 (XeaCFBP3836p_15625) - 3665587..3665871 (-) 285 WP_029820062.1 ribbon-helix-helix domain-containing protein -
  XeaCFBP3836p_RS15630 (XeaCFBP3836p_15630) sucD 3666102..3666977 (-) 876 WP_029820064.1 succinate--CoA ligase subunit alpha -
  XeaCFBP3836p_RS15635 (XeaCFBP3836p_15635) sucC 3667002..3668171 (-) 1170 WP_007965356.1 ADP-forming succinate--CoA ligase subunit beta -
  XeaCFBP3836p_RS15640 (XeaCFBP3836p_15640) - 3668403..3670016 (+) 1614 WP_029820065.1 HAMP domain-containing sensor histidine kinase -
  XeaCFBP3836p_RS15645 (XeaCFBP3836p_15645) pilR 3670284..3671744 (+) 1461 WP_029820066.1 sigma-54 dependent transcriptional regulator Regulator
  XeaCFBP3836p_RS15650 (XeaCFBP3836p_15650) pilB 3671959..3673695 (-) 1737 WP_014090854.1 type IV-A pilus assembly ATPase PilB Machinery gene
  XeaCFBP3836p_RS15655 (XeaCFBP3836p_15655) - 3673738..3674148 (-) 411 WP_029820067.1 pilin -
  XeaCFBP3836p_RS15660 (XeaCFBP3836p_15660) pilA 3674333..3674743 (-) 411 WP_029820068.1 pilin Machinery gene
  XeaCFBP3836p_RS15665 (XeaCFBP3836p_15665) pilC 3675077..3676333 (+) 1257 WP_014090856.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 486 a.a.        Molecular weight: 52731.58 Da        Isoelectric Point: 6.8261

>NTDB_id=551392 XeaCFBP3836p_RS15645 WP_029820066.1 3670284..3671744(+) (pilR) [Xanthomonas euvesicatoria pv. alfalfae strain CFBP3836]
MCRDLLDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPPPEQA
SRLLGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSF
TGAHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDL
YYRINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQIS
ATDLRLPAHGGHRLAVPNGGAAAEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKL
KKLGME

Nucleotide


Download         Length: 1461 bp        

>NTDB_id=551392 XeaCFBP3836p_RS15645 WP_029820066.1 3670284..3671744(+) (pilR) [Xanthomonas euvesicatoria pv. alfalfae strain CFBP3836]
GTGTGCCGCGACCTGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGCTTGCGCATCAGCACCG
CGGCGAACCTGGCCGAGGCTCGCGAGTTGCTGGCCAACAACCCCTACGATCTGTGCCTGACCGACATGCGGTTGCCGGAC
GGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTACCCGCAGACACCGGTGGCGATGATCACCGCCTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAATCGCGACCGTCCCGCTCCGCCACCGCCACCGCCGCCACCGGAACAGGCC
AGCCGCCTGCTCGGGGACTCCAGTGCCATGGAAAGCCTGCGCGCCACCATCGGCAAGGTTGCGCGCAGCCAGGCGCCGGT
CTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTCGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCC
CGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGCCGAATTGATGGAAAGCGAATTCTTCGGCCACAAGAAGGGCAGCTTC
ACCGGCGCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATT
GCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGACCGGTCGGCGCATCCAGCGAATCGC
TGGTGGATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACCTG
TACTACCGCATCAACGTAATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCGCAGCTGGCCGCTGC
CATCATCGCGCGCCTGGCGCACAGCCATGGCCGCCCCATTCCGCTGCTGACCCAGTCGGCGCTCGACGCATTGAATCACT
ACGGCTTCCCAGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGC
GCCACCGACCTGCGCCTGCCCGCTCACGGCGGCCACCGTCTGGCTGTCCCCAACGGAGGTGCCGCGGCCGAGCCGCGCGA
AGCCGTCGTGGACATCGACCCGGCCTCAGCCGCGCTGCCGTCCTACATCGAGCAACTGGAGCGCGCCGCGATCCAGAAGG
CACTGGAAGAAAACCGCTGGAACAAGACCAAGACTGCGGCGCAGCTGGGCATCACGTTTCGCGCGCTGCGTTACAAGTTG
AAGAAACTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(443-483)

Sigma-54 interaction domain (Sigma54_activat)

(164-329)

Response regulator receiver domain (Response_reg)

(28-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.796

95.679

0.601
  pilR Acinetobacter baumannii strain A118

49.032

95.679

0.469