Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LSP16_RS10425 Genome accession   NZ_CP089067
Coordinates   2208139..2208564 (-) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain UNC_PaerCF19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2203139..2213564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP16_RS10405 (LSP16_10395) ileS 2203296..2206127 (+) 2832 WP_003102617.1 isoleucine--tRNA ligase -
  LSP16_RS10410 (LSP16_10400) lspA 2206120..2206629 (+) 510 WP_003102615.1 signal peptidase II -
  LSP16_RS10415 (LSP16_10405) fkpB 2206622..2207062 (+) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  LSP16_RS10420 (LSP16_10410) ispH 2207148..2208092 (+) 945 WP_003112824.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LSP16_RS10425 (LSP16_10415) comF 2208139..2208564 (-) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  LSP16_RS10430 (LSP16_10420) pilY2 2208561..2208908 (-) 348 WP_219833044.1 PilY2 family type 4a fimbrial biogenesis protein -
  LSP16_RS32535 pilY1 2208910..2212400 (-) 3491 Protein_2060 type 4a pilus biogenesis protein PilY1 -
  LSP16_RS10440 (LSP16_10430) pilX 2212412..2212999 (-) 588 WP_015648054.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=548653 LSP16_RS10425 WP_003094721.1 2208139..2208564(-) (comF) [Pseudomonas aeruginosa strain UNC_PaerCF19]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=548653 LSP16_RS10425 WP_003094721.1 2208139..2208564(-) (comF) [Pseudomonas aeruginosa strain UNC_PaerCF19]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383