Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE/cglE   Type   Machinery gene
Locus tag   JN057_RS10030 Genome accession   NZ_CP071871
Coordinates   1927767..1928069 (-) Length   100 a.a.
NCBI ID   WP_000413382.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain BVJ1JL     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1922767..1933069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN057_RS10000 (JN057_02050) rnpA 1923446..1923817 (-) 372 WP_000739246.1 ribonuclease P protein component -
  JN057_RS11610 - 1923834..1923965 (-) 132 WP_000768904.1 hypothetical protein -
  JN057_RS10005 (JN057_02051) - 1923966..1925156 (-) 1191 WP_000167766.1 acetate kinase -
  JN057_RS10010 (JN057_02052) comYH 1925207..1926160 (-) 954 WP_000345116.1 class I SAM-dependent methyltransferase Machinery gene
  JN057_RS10015 - 1926221..1926815 (-) 595 Protein_1964 class I SAM-dependent methyltransferase -
  JN057_RS10020 (JN057_02054) comGG/cglG 1926952..1927365 (-) 414 WP_061370822.1 competence type IV pilus minor pilin ComGG Machinery gene
  JN057_RS10025 (JN057_02055) comGF/cglF 1927343..1927804 (-) 462 WP_000250531.1 competence type IV pilus minor pilin ComGF Machinery gene
  JN057_RS10030 (JN057_02056) comGE/cglE 1927767..1928069 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  JN057_RS10035 (JN057_02057) comGD/cglD 1928032..1928436 (-) 405 WP_000588020.1 competence type IV pilus minor pilin ComGD Machinery gene
  JN057_RS10040 (JN057_02058) comGC/cglC 1928429..1928755 (-) 327 WP_000738633.1 comG operon protein ComGC Machinery gene
  JN057_RS10045 (JN057_02059) comGB/cglB 1928757..1929773 (-) 1017 WP_001844679.1 competence type IV pilus assembly protein ComGB Machinery gene
  JN057_RS10050 (JN057_02060) comGA/cglA/cilD 1929721..1930662 (-) 942 WP_000249571.1 competence type IV pilus ATPase ComGA Machinery gene
  JN057_RS10055 (JN057_02061) - 1930738..1931103 (-) 366 WP_000286415.1 DUF1033 family protein -
  JN057_RS10060 (JN057_02062) - 1931254..1932312 (-) 1059 WP_000649471.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 11108.08 Da        Isoelectric Point: 9.7273

>NTDB_id=548651 JN057_RS10030 WP_000413382.1 1927767..1928069(-) (comGE/cglE) [Streptococcus pneumoniae strain BVJ1JL]
MEKLNALRKQKIRAVILLEAVVALAIFASIATLLLGQIQKNRQEEAKILQKEEVLRVAKMALQTGQNQVSINGVEIQVFS
SEKGLEVYHGSEQLLAIKEP

Nucleotide


Download         Length: 303 bp        

>NTDB_id=548651 JN057_RS10030 WP_000413382.1 1927767..1928069(-) (comGE/cglE) [Streptococcus pneumoniae strain BVJ1JL]
ATGGAAAAATTAAACGCATTAAGGAAACAAAAAATTAGGGCAGTGATTTTACTGGAAGCAGTAGTCGCTCTAGCTATCTT
TGCCAGCATTGCGACCCTCCTTTTGGGACAAATTCAAAAAAATAGGCAAGAGGAAGCAAAAATCTTGCAAAAGGAAGAAG
TCTTGAGGGTAGCTAAGATGGCCTTGCAGACGGGGCAAAATCAGGTAAGCATCAACGGAGTTGAGATTCAGGTATTTTCT
AGTGAAAAAGGATTGGAGGTCTACCATGGTTCAGAACAGTTGTTGGCAATCAAAGAGCCATAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(16-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE/cglE Streptococcus pneumoniae Rx1

100

100

1
  comGE/cglE Streptococcus pneumoniae D39

100

100

1
  comGE/cglE Streptococcus pneumoniae R6

100

100

1
  comGE/cglE Streptococcus pneumoniae TIGR4

100

100

1
  comGE/cglE Streptococcus mitis NCTC 12261

98

100

0.98
  comGE/cglE Streptococcus mitis SK321

98

100

0.98
  comYE Streptococcus mutans UA140

44.444

90

0.4
  comYE Streptococcus mutans UA159

44.444

90

0.4