NTDB

Overview

Name	comGC	Type	Machinery gene
Locus tag	K6969_RS01350	Genome accession	NZ_CP082205
Coordinates	237462..237743 (+)	Length	93 a.a.
NCBI ID	WP_171942939.1	Uniprot ID	-
Organism	Streptococcus suis strain AKJ18
Function	dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 232462..242743

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6969_RS01330 (K6969_01300)	-	233026..234402 (-)	1377	WP_414820583.1	IS1182 family transposase	-
K6969_RS01335 (K6969_01305)	-	234507..235475 (-)	969	WP_321537437.1	S66 peptidase family protein	-
K6969_RS01340 (K6969_01310)	comGA	235561..236511 (+)	951	WP_171942940.1	competence type IV pilus ATPase ComGA	Machinery gene
K6969_RS01345 (K6969_01315)	comGB	236423..237460 (+)	1038	WP_253911821.1	competence type IV pilus assembly protein ComGB	Machinery gene
K6969_RS01350 (K6969_01320)	comGC	237462..237743 (+)	282	WP_171942939.1	competence type IV pilus major pilin ComGC	Machinery gene
K6969_RS01355 (K6969_01325)	comGD	237724..238131 (+)	408	WP_171942938.1	competence type IV pilus minor pilin ComGD	Machinery gene
K6969_RS01360 (K6969_01330)	comGE	238103..238396 (+)	294	WP_024376294.1	competence type IV pilus minor pilin ComGE	Machinery gene
K6969_RS01365 (K6969_01335)	comGF/cglF	238383..238817 (+)	435	WP_029173990.1	competence type IV pilus minor pilin ComGF	Machinery gene
K6969_RS01370 (K6969_01340)	comGG	238795..239322 (+)	528	WP_029173991.1	competence type IV pilus minor pilin ComGG	-
K6969_RS01375 (K6969_01345)	comGH	239379..240332 (+)	954	WP_029173992.1	class I SAM-dependent methyltransferase	Machinery gene
K6969_RS01380 (K6969_01350)	-	240383..241570 (+)	1188	WP_171942932.1	acetate kinase	-
K6969_RS01385 (K6969_01355)	-	241885..242436 (+)	552	WP_171942931.1	folate family ECF transporter S component	-

Sequence

Protein

Download Length: 93 a.a. Molecular weight: 10464.40 Da Isoelectric Point: 5.8717

                                >NTDB_id=527319 K6969_RS01350 WP_171942939.1 237462..237743(+) (comGC) [Streptococcus suis strain AKJ18]

MKKLIEMKVKAFTLVEMLVVLGIISLLLLIFVPNLSQQKDAIQKKGNAAVIKVVESQMELYELEHDKEATVADLQADGYI

TEKQAEEYAKAKK

Nucleotide

Download Length: 282 bp

                                >NTDB_id=527319 K6969_RS01350 WP_171942939.1 237462..237743(+) (comGC) [Streptococcus suis strain AKJ18]

ATGAAAAAATTAATTGAAATGAAGGTAAAAGCTTTCACTCTGGTGGAAATGTTAGTTGTTTTGGGTATTATTAGCCTGCT

CTTGCTCATTTTTGTGCCAAATTTGAGCCAGCAGAAGGATGCTATTCAGAAGAAGGGGAATGCGGCTGTTATCAAAGTGG

TGGAGAGTCAAATGGAACTCTATGAATTGGAACATGACAAGGAAGCTACGGTAGCAGACTTGCAAGCGGATGGCTATATT

ACTGAAAAACAAGCGGAAGAGTATGCTAAGGCGAAAAAATAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-30)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comGC	Streptococcus suis isolate S10	89.247	100	0.892
comGC/cglC	Streptococcus pneumoniae TIGR4	63.043	98.925	0.624
comGC/cglC	Streptococcus pneumoniae Rx1	63.043	98.925	0.624
comGC/cglC	Streptococcus pneumoniae D39	63.043	98.925	0.624
comGC/cglC	Streptococcus pneumoniae R6	63.043	98.925	0.624
comGC/cglC	Streptococcus mitis SK321	63.043	98.925	0.624
comGC/cglC	Streptococcus mitis NCTC 12261	63.043	98.925	0.624
comGC	Streptococcus gordonii str. Challis substr. CH1	61.798	95.699	0.591
comGC	Streptococcus mutans UA140	59.091	94.624	0.559
comGC	Streptococcus mutans UA159	59.091	94.624	0.559
comGC	Lactococcus lactis subsp. cremoris KW2	55.682	94.624	0.527
comGC	Staphylococcus aureus MW2	50	83.871	0.419
comGC	Staphylococcus aureus N315	50	83.871	0.419
comGC	Bacillus subtilis subsp. subtilis str. 168	49.333	80.645	0.398

Detailed information NTG0527319