Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   K6969_RS01355 Genome accession   NZ_CP082205
Coordinates   237724..238131 (+) Length   135 a.a.
NCBI ID   WP_171942938.1    Uniprot ID   -
Organism   Streptococcus suis strain AKJ18     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 232724..243131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6969_RS01330 (K6969_01300) - 233026..234402 (-) 1377 WP_414820583.1 IS1182 family transposase -
  K6969_RS01335 (K6969_01305) - 234507..235475 (-) 969 WP_321537437.1 S66 peptidase family protein -
  K6969_RS01340 (K6969_01310) comGA 235561..236511 (+) 951 WP_171942940.1 competence type IV pilus ATPase ComGA Machinery gene
  K6969_RS01345 (K6969_01315) comGB 236423..237460 (+) 1038 WP_253911821.1 competence type IV pilus assembly protein ComGB Machinery gene
  K6969_RS01350 (K6969_01320) comGC 237462..237743 (+) 282 WP_171942939.1 competence type IV pilus major pilin ComGC Machinery gene
  K6969_RS01355 (K6969_01325) comGD 237724..238131 (+) 408 WP_171942938.1 competence type IV pilus minor pilin ComGD Machinery gene
  K6969_RS01360 (K6969_01330) comGE 238103..238396 (+) 294 WP_024376294.1 competence type IV pilus minor pilin ComGE Machinery gene
  K6969_RS01365 (K6969_01335) comGF/cglF 238383..238817 (+) 435 WP_029173990.1 competence type IV pilus minor pilin ComGF Machinery gene
  K6969_RS01370 (K6969_01340) comGG 238795..239322 (+) 528 WP_029173991.1 competence type IV pilus minor pilin ComGG -
  K6969_RS01375 (K6969_01345) comGH 239379..240332 (+) 954 WP_029173992.1 class I SAM-dependent methyltransferase Machinery gene
  K6969_RS01380 (K6969_01350) - 240383..241570 (+) 1188 WP_171942932.1 acetate kinase -
  K6969_RS01385 (K6969_01355) - 241885..242436 (+) 552 WP_171942931.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15349.54 Da        Isoelectric Point: 9.6398

>NTDB_id=527320 K6969_RS01355 WP_171942938.1 237724..238131(+) (comGD) [Streptococcus suis strain AKJ18]
MLRRKNKAFTLFESLLTLFVVSFLAVSLSGTVQTVFRSVQEEIFLWEFEAIYKDSQKLAASSHQKVNLAIGGQEVTNGYQ
AVEVPGNVEVLEEKNIKFEENGGNSSLTKIRFRLSRKTVTYQLYIGSGRYKKTEE

Nucleotide


Download         Length: 408 bp        

>NTDB_id=527320 K6969_RS01355 WP_171942938.1 237724..238131(+) (comGD) [Streptococcus suis strain AKJ18]
ATGCTAAGGCGAAAAAATAAGGCTTTTACCCTGTTTGAAAGCCTGCTGACCTTGTTTGTTGTCAGTTTTTTAGCTGTTTC
CTTATCAGGAACGGTACAAACGGTCTTTCGGTCTGTTCAGGAAGAAATTTTTCTCTGGGAATTTGAGGCCATCTATAAAG
ACAGTCAGAAATTGGCAGCCAGTTCCCATCAAAAAGTGAACCTTGCTATCGGTGGACAGGAGGTTACAAATGGTTATCAG
GCTGTAGAGGTACCCGGAAATGTAGAGGTCTTGGAGGAGAAAAATATCAAATTTGAAGAAAATGGAGGAAATTCTTCCCT
GACCAAAATTCGTTTTCGGCTTAGTCGAAAGACAGTCACGTATCAATTATATATAGGGAGTGGTCGCTATAAGAAAACAG
AAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus gordonii str. Challis substr. CH1

48.031

94.074

0.452
  comGD Streptococcus mutans UA159

46.512

95.556

0.444
  comGD Streptococcus mutans UA140

46.512

95.556

0.444
  comGD/cglD Streptococcus pneumoniae TIGR4

45.736

95.556

0.437
  comGD/cglD Streptococcus pneumoniae D39

45.736

95.556

0.437
  comGD/cglD Streptococcus pneumoniae Rx1

45.736

95.556

0.437
  comGD/cglD Streptococcus pneumoniae R6

45.736

95.556

0.437
  comGD/cglD Streptococcus mitis SK321

44.961

95.556

0.43
  comGD/cglD Streptococcus mitis NCTC 12261

44.961

95.556

0.43
  comGD Lactococcus lactis subsp. cremoris KW2

39.844

94.815

0.378