Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   J6O12_RS06145 Genome accession   NZ_CP081724
Coordinates   1243796..1244533 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain CX07     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1238796..1249533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6O12_RS06115 (J6O12_06100) yfiL 1238953..1239318 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  J6O12_RS06120 (J6O12_06105) aroF 1239528..1240598 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  J6O12_RS06125 (J6O12_06110) tyrA 1240609..1241730 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  J6O12_RS06130 (J6O12_06115) pheA 1241773..1242933 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  J6O12_RS06135 (J6O12_06120) pheL 1243033..1243080 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  J6O12_RS06140 (J6O12_06125) raiA 1243184..1243525 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  J6O12_RS06145 (J6O12_06130) comL 1243796..1244533 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  J6O12_RS06150 (J6O12_06135) rluD 1244668..1245648 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  J6O12_RS06155 (J6O12_06140) yfiH 1245645..1246376 (+) 732 WP_000040142.1 purine nucleoside phosphorylase YfiH -
  J6O12_RS06160 (J6O12_06145) clpC 1246506..1249079 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=523619 J6O12_RS06145 WP_000197686.1 1243796..1244533(-) (comL) [Escherichia coli strain CX07]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=523619 J6O12_RS06145 WP_000197686.1 1243796..1244533(-) (comL) [Escherichia coli strain CX07]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACT
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCACTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376