Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | T1E_RS00850 | Genome accession | NC_018220 |
| Coordinates | 186093..187091 (-) | Length | 332 a.a. |
| NCBI ID | WP_014859106.1 | Uniprot ID | I7C2Y4 |
| Organism | Pseudomonas putida DOT-T1E | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 181093..192091
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| T1E_RS00830 (T1E_0161) | argS | 182225..183961 (+) | 1737 | WP_003249124.1 | arginine--tRNA ligase | - |
| T1E_RS00835 (T1E_0162) | - | 183963..184661 (+) | 699 | WP_014859104.1 | SPOR domain-containing protein | - |
| T1E_RS00840 (T1E_0163) | - | 184753..185172 (-) | 420 | WP_003249120.1 | TM2 domain-containing protein | - |
| T1E_RS00845 (T1E_0164) | - | 185339..185965 (+) | 627 | WP_014859105.1 | C40 family peptidase | - |
| T1E_RS00850 (T1E_0165) | pilT | 186093..187091 (-) | 999 | WP_014859106.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| T1E_RS00855 (T1E_0166) | - | 187157..187843 (+) | 687 | WP_004575484.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| T1E_RS00860 (T1E_0167) | proC | 187882..188700 (+) | 819 | WP_004575483.1 | pyrroline-5-carboxylate reductase | - |
| T1E_RS00865 (T1E_0168) | - | 188711..189301 (+) | 591 | WP_012053960.1 | YggT family protein | - |
| T1E_RS00870 (T1E_0169) | - | 189401..190540 (+) | 1140 | WP_003249108.1 | homoserine O-acetyltransferase | - |
| T1E_RS00875 (T1E_0170) | metW | 190548..191168 (+) | 621 | WP_003249106.1 | methionine biosynthesis protein MetW | - |
| T1E_RS00880 (T1E_0171) | - | 191191..191625 (+) | 435 | WP_012053961.1 | DUF4426 domain-containing protein | - |
Sequence
Protein
Download Length: 332 a.a. Molecular weight: 35906.63 Da Isoelectric Point: 7.0579
>NTDB_id=52229 T1E_RS00850 WP_014859106.1 186093..187091(-) (pilT) [Pseudomonas putida DOT-T1E]
MDVTDLLARAVDAGASDLHLATGQIPMLRLDGELQRMGLPPLSQGALIQGMASVLDDDQRRQWAQGDEMDLALELPALGR
FRLNLFRQLNGPAVTFRLIPGRIATVSELDLADVFQAVAQCRDGLILVGGPTGSGKSSTLATLLDQLNREQALHIITLED
PVEVIHASQRSLVNQREMGRHSRGFAQGLRSALRQDLDVIMIGELRDLETIRLALRAAETGHLVLATVHARSATSSIDRL
VEVFAAEEKPLVRAMLAESLRLVVAQVLVRCVGGGRVAAREVLVATPAVRNLIREGRLAQLSSVMQGGAAEGMLTMEGAL
RRLRERGLIKGL
MDVTDLLARAVDAGASDLHLATGQIPMLRLDGELQRMGLPPLSQGALIQGMASVLDDDQRRQWAQGDEMDLALELPALGR
FRLNLFRQLNGPAVTFRLIPGRIATVSELDLADVFQAVAQCRDGLILVGGPTGSGKSSTLATLLDQLNREQALHIITLED
PVEVIHASQRSLVNQREMGRHSRGFAQGLRSALRQDLDVIMIGELRDLETIRLALRAAETGHLVLATVHARSATSSIDRL
VEVFAAEEKPLVRAMLAESLRLVVAQVLVRCVGGGRVAAREVLVATPAVRNLIREGRLAQLSSVMQGGAAEGMLTMEGAL
RRLRERGLIKGL
Nucleotide
Download Length: 999 bp
>NTDB_id=52229 T1E_RS00850 WP_014859106.1 186093..187091(-) (pilT) [Pseudomonas putida DOT-T1E]
ATGGATGTGACCGACCTGTTGGCCCGAGCTGTGGATGCGGGGGCTTCAGACCTGCACCTGGCGACGGGCCAGATTCCGAT
GCTGCGCCTGGATGGCGAGTTGCAGCGTATGGGCTTGCCGCCCTTGAGCCAGGGTGCCTTGATCCAGGGCATGGCGAGCG
TGCTGGATGACGATCAGCGCCGGCAGTGGGCCCAAGGCGATGAAATGGACCTTGCGCTGGAGTTGCCGGCGCTTGGGCGC
TTTCGGCTGAACCTGTTTCGCCAGTTGAATGGCCCGGCGGTTACCTTTCGGTTGATTCCGGGGCGCATTGCGACGGTGAG
TGAGCTGGACCTTGCGGATGTGTTTCAAGCTGTTGCGCAATGCCGGGATGGCTTGATCCTCGTAGGCGGGCCGACCGGCA
GTGGCAAGTCCAGTACCCTGGCAACGCTACTCGACCAGCTGAACCGCGAGCAAGCGCTGCACATCATCACCCTGGAAGAC
CCTGTCGAGGTCATCCATGCCAGCCAGCGCAGCCTGGTCAACCAACGTGAGATGGGGCGCCATAGTCGCGGCTTTGCTCA
GGGGCTGCGCAGTGCGCTGCGCCAGGACCTGGACGTGATCATGATCGGCGAGTTGCGCGACCTTGAAACCATTCGCCTGG
CCCTGCGCGCGGCCGAAACCGGGCACCTGGTGCTGGCAACCGTGCATGCGCGTTCGGCGACCAGCAGCATCGACAGGTTG
GTGGAGGTTTTTGCTGCCGAGGAAAAGCCGTTGGTGCGGGCGATGCTGGCCGAGTCGCTGCGCCTGGTGGTCGCGCAGGT
GCTGGTCAGGTGCGTGGGGGGTGGGCGGGTGGCTGCGCGGGAAGTGCTGGTGGCGACGCCGGCGGTGCGTAACCTGATTC
GGGAGGGGCGGTTGGCGCAGTTGTCTTCGGTGATGCAGGGCGGGGCGGCGGAGGGGATGCTGACGATGGAGGGGGCGTTG
CGGAGGCTGAGGGAGCGAGGGTTGATCAAAGGCTTGTAG
ATGGATGTGACCGACCTGTTGGCCCGAGCTGTGGATGCGGGGGCTTCAGACCTGCACCTGGCGACGGGCCAGATTCCGAT
GCTGCGCCTGGATGGCGAGTTGCAGCGTATGGGCTTGCCGCCCTTGAGCCAGGGTGCCTTGATCCAGGGCATGGCGAGCG
TGCTGGATGACGATCAGCGCCGGCAGTGGGCCCAAGGCGATGAAATGGACCTTGCGCTGGAGTTGCCGGCGCTTGGGCGC
TTTCGGCTGAACCTGTTTCGCCAGTTGAATGGCCCGGCGGTTACCTTTCGGTTGATTCCGGGGCGCATTGCGACGGTGAG
TGAGCTGGACCTTGCGGATGTGTTTCAAGCTGTTGCGCAATGCCGGGATGGCTTGATCCTCGTAGGCGGGCCGACCGGCA
GTGGCAAGTCCAGTACCCTGGCAACGCTACTCGACCAGCTGAACCGCGAGCAAGCGCTGCACATCATCACCCTGGAAGAC
CCTGTCGAGGTCATCCATGCCAGCCAGCGCAGCCTGGTCAACCAACGTGAGATGGGGCGCCATAGTCGCGGCTTTGCTCA
GGGGCTGCGCAGTGCGCTGCGCCAGGACCTGGACGTGATCATGATCGGCGAGTTGCGCGACCTTGAAACCATTCGCCTGG
CCCTGCGCGCGGCCGAAACCGGGCACCTGGTGCTGGCAACCGTGCATGCGCGTTCGGCGACCAGCAGCATCGACAGGTTG
GTGGAGGTTTTTGCTGCCGAGGAAAAGCCGTTGGTGCGGGCGATGCTGGCCGAGTCGCTGCGCCTGGTGGTCGCGCAGGT
GCTGGTCAGGTGCGTGGGGGGTGGGCGGGTGGCTGCGCGGGAAGTGCTGGTGGCGACGCCGGCGGTGCGTAACCTGATTC
GGGAGGGGCGGTTGGCGCAGTTGTCTTCGGTGATGCAGGGCGGGGCGGCGGAGGGGATGCTGACGATGGAGGGGGCGTTG
CGGAGGCTGAGGGAGCGAGGGTTGATCAAAGGCTTGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas aeruginosa PAK |
51.064 |
99.096 |
0.506 |
| pilT | Acinetobacter baumannii D1279779 |
50.152 |
99.096 |
0.497 |
| pilT | Acinetobacter baumannii strain A118 |
50.152 |
99.096 |
0.497 |
| pilT | Pseudomonas stutzeri DSM 10701 |
50.152 |
99.096 |
0.497 |
| pilT | Acinetobacter nosocomialis M2 |
50.152 |
99.096 |
0.497 |
| pilT | Acinetobacter baylyi ADP1 |
49.697 |
99.398 |
0.494 |
| pilT | Neisseria meningitidis 8013 |
49.697 |
99.398 |
0.494 |
| pilT | Neisseria gonorrhoeae MS11 |
49.394 |
99.398 |
0.491 |
| pilT | Vibrio cholerae strain A1552 |
48.936 |
99.096 |
0.485 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
48.936 |
99.096 |
0.485 |
| pilT | Legionella pneumophila strain Lp02 |
48.632 |
99.096 |
0.482 |
| pilT | Legionella pneumophila strain ERS1305867 |
48.632 |
99.096 |
0.482 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
46.429 |
100 |
0.47 |
| pilU | Pseudomonas stutzeri DSM 10701 |
37.576 |
99.398 |
0.373 |