Detailed information
Bioinformatically predicted
Overview
| Name | comE1/comEA | Type | Machinery gene |
| Locus tag | JFB93_RS03785 | Genome accession | NZ_CP066315 |
| Coordinates | 887361..887609 (+) | Length | 82 a.a. |
| NCBI ID | WP_233102486.1 | Uniprot ID | - |
| Organism | Providencia rettgeri strain R39 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 882361..892609
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JFB93_RS03775 (JFB93_03775) | hupB | 884772..885047 (+) | 276 | WP_004914513.1 | nucleoid-associated protein HU-beta | - |
| JFB93_RS03780 (JFB93_03780) | ppiD | 885223..887094 (+) | 1872 | WP_042846904.1 | peptidylprolyl isomerase | - |
| JFB93_RS03785 (JFB93_03785) | comE1/comEA | 887361..887609 (+) | 249 | WP_233102486.1 | ComEA family DNA-binding protein | Machinery gene |
| JFB93_RS03790 (JFB93_03790) | - | 887805..888233 (+) | 429 | WP_131680450.1 | acyl-CoA thioesterase | - |
| JFB93_RS03795 (JFB93_03795) | queC | 888275..888976 (-) | 702 | WP_198861145.1 | 7-cyano-7-deazaguanine synthase QueC | - |
| JFB93_RS03800 (JFB93_03800) | - | 889255..889716 (+) | 462 | WP_042846899.1 | Lrp/AsnC family transcriptional regulator | - |
| JFB93_RS03805 (JFB93_03805) | - | 889792..891537 (+) | 1746 | WP_071547717.1 | SmdA family multidrug ABC transporter permease/ATP-binding protein | - |
Sequence
Protein
Download Length: 82 a.a. Molecular weight: 9024.26 Da Isoelectric Point: 9.5415
>NTDB_id=519276 JFB93_RS03785 WP_233102486.1 887361..887609(+) (comE1/comEA) [Providencia rettgeri strain R39]
MQKKASNENSQLISSEQSDKVNINSASVDELAQKLSGIGKQKAKAIVEYRQKYGAFNSIENILEVQGIGPAFLEKNKDKI
VL
MQKKASNENSQLISSEQSDKVNINSASVDELAQKLSGIGKQKAKAIVEYRQKYGAFNSIENILEVQGIGPAFLEKNKDKI
VL
Nucleotide
Download Length: 249 bp
>NTDB_id=519276 JFB93_RS03785 WP_233102486.1 887361..887609(+) (comE1/comEA) [Providencia rettgeri strain R39]
GTGCAAAAAAAAGCGTCAAATGAAAACTCACAACTCATATCTTCAGAGCAATCAGACAAAGTCAATATTAATTCAGCAAG
TGTAGATGAGCTAGCACAAAAGCTGAGTGGCATCGGCAAGCAAAAAGCGAAAGCAATTGTTGAATATAGGCAAAAGTATG
GGGCTTTTAATTCAATTGAAAATATTCTAGAAGTTCAGGGGATAGGGCCTGCATTTTTAGAGAAAAATAAAGATAAAATT
GTACTGTAG
GTGCAAAAAAAAGCGTCAAATGAAAACTCACAACTCATATCTTCAGAGCAATCAGACAAAGTCAATATTAATTCAGCAAG
TGTAGATGAGCTAGCACAAAAGCTGAGTGGCATCGGCAAGCAAAAAGCGAAAGCAATTGTTGAATATAGGCAAAAGTATG
GGGCTTTTAATTCAATTGAAAATATTCTAGAAGTTCAGGGGATAGGGCCTGCATTTTTAGAGAAAAATAAAGATAAAATT
GTACTGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE1/comEA | Haemophilus influenzae Rd KW20 |
45.055 |
100 |
0.5 |
| comEA | Acinetobacter baumannii strain A118 |
45.238 |
100 |
0.463 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
58.065 |
75.61 |
0.439 |
| comEA | Acinetobacter baylyi ADP1 |
57.143 |
76.829 |
0.439 |
| comEA | Lactococcus lactis subsp. cremoris KW2 |
51.471 |
82.927 |
0.427 |
| comE | Neisseria gonorrhoeae MS11 |
58.621 |
70.732 |
0.415 |
| comE | Neisseria gonorrhoeae MS11 |
58.621 |
70.732 |
0.415 |
| comE | Neisseria gonorrhoeae MS11 |
58.621 |
70.732 |
0.415 |
| comE | Neisseria gonorrhoeae MS11 |
58.621 |
70.732 |
0.415 |
| comEA | Acinetobacter baumannii D1279779 |
50 |
82.927 |
0.415 |
| comEA | Vibrio cholerae C6706 |
50 |
75.61 |
0.378 |
| comEA | Vibrio cholerae strain A1552 |
50 |
75.61 |
0.378 |
| Cj0011c | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
48.387 |
75.61 |
0.366 |
| comEA | Vibrio campbellii strain DS40M4 |
48.387 |
75.61 |
0.366 |
| comEA | Bacillus subtilis subsp. subtilis str. 168 |
48.387 |
75.61 |
0.366 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
48.387 |
75.61 |
0.366 |