Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilA1   Type   Machinery gene
Locus tag   I6H63_RS11305 Genome accession   NZ_CP066057
Coordinates   530750..531196 (+) Length   148 a.a.
NCBI ID   WP_067008124.1    Uniprot ID   A0A1B8QLY1
Organism   Moraxella nonliquefaciens strain FDAARGOS_1006     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 525750..536196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H63_RS02775 (I6H63_02775) - 527151..528323 (+) 1173 WP_067008118.1 D-alanyl-D-alanine carboxypeptidase family protein -
  I6H63_RS02780 (I6H63_02780) - 528510..529709 (+) 1200 WP_067008121.1 phosphoglycerate kinase -
  I6H63_RS02785 (I6H63_02785) - 529885..530214 (+) 330 WP_066893581.1 membrane lipoprotein lipid attachment site-containing protein -
  I6H63_RS11305 (I6H63_02790) pilA/pilA1 530750..531196 (+) 447 WP_067008124.1 pilin Machinery gene
  I6H63_RS02795 (I6H63_02795) - 531383..531832 (+) 450 WP_067008128.1 pilin -
  I6H63_RS02800 (I6H63_02800) tfpZ 531895..532653 (+) 759 WP_067008131.1 TfpX/TfpZ family type IV pilin accessory protein -
  I6H63_RS02805 (I6H63_02805) pilA/pilA1 532729..533112 (-) 384 WP_320158679.1 pilin Machinery gene
  I6H63_RS02810 (I6H63_02810) - 533169..534134 (-) 966 WP_067008136.1 IS110 family transposase -
  I6H63_RS02815 (I6H63_02815) serA 534342..535568 (-) 1227 WP_067008137.1 phosphoglycerate dehydrogenase -
  I6H63_RS02820 (I6H63_02820) - 535955..536143 (-) 189 WP_067008142.1 hypothetical protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 15296.38 Da        Isoelectric Point: 6.2368

>NTDB_id=516912 I6H63_RS11305 WP_067008124.1 530750..531196(+) (pilA/pilA1) [Moraxella nonliquefaciens strain FDAARGOS_1006]
MNAQKGFTLIELMIVIAIIGILAAIALPAYQDYTARAQATEAIKATAGVQSDIGVFVADQNRYPQQAEVAGVTNLAGKYF
SAGKVTITGGDAATVDTPTTPSVIQVEFDSGANKSKTVTLTPTAANGQISKWTCGGTIDSGRLPKSCQ

Nucleotide


Download         Length: 447 bp        

>NTDB_id=516912 I6H63_RS11305 WP_067008124.1 530750..531196(+) (pilA/pilA1) [Moraxella nonliquefaciens strain FDAARGOS_1006]
ATGAACGCTCAAAAAGGTTTTACCCTGATTGAATTGATGATTGTTATCGCCATTATTGGTATCCTAGCAGCTATCGCATT
GCCTGCGTATCAAGACTACACCGCTCGTGCGCAAGCAACCGAAGCCATAAAAGCCACAGCAGGTGTGCAGTCTGACATCG
GTGTGTTTGTTGCTGACCAAAACCGCTATCCACAACAAGCAGAAGTAGCAGGGGTTACTAACTTAGCTGGTAAATACTTT
TCAGCAGGTAAAGTTACAATAACTGGTGGTGATGCTGCTACTGTTGACACACCAACCACCCCAAGTGTTATTCAAGTGGA
GTTTGATTCTGGTGCTAATAAAAGCAAGACAGTTACCTTAACCCCAACTGCTGCAAATGGTCAAATCTCAAAATGGACTT
GTGGTGGCACAATCGACTCAGGCCGTCTGCCTAAGAGCTGTCAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B8QLY1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilA1 Eikenella corrodens VA1

58.228

100

0.622
  comP Acinetobacter baylyi ADP1

43.791

100

0.453
  pilE Neisseria gonorrhoeae MS11

39.053

100

0.446
  pilE Neisseria gonorrhoeae strain FA1090

38.462

100

0.439
  pilA Pseudomonas aeruginosa PAK

38.182

100

0.426
  pilA/pilAI Pseudomonas stutzeri DSM 10701

37.5

100

0.405
  pilA2 Legionella pneumophila strain ERS1305867

39.865

100

0.399
  pilA2 Legionella pneumophila str. Paris

39.865

100

0.399
  pilA Haemophilus influenzae 86-028NP

39.437

95.946

0.378
  pilA Ralstonia pseudosolanacearum GMI1000

39.007

95.27

0.372
  pilA Vibrio cholerae C6706

37.162

100

0.372
  pilA Vibrio cholerae strain A1552

37.162

100

0.372
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

37.162

100

0.372