Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilA1   Type   Machinery gene
Locus tag   I6H63_RS02805 Genome accession   NZ_CP066057
Coordinates   532729..533112 (-) Length   127 a.a.
NCBI ID   WP_320158679.1    Uniprot ID   -
Organism   Moraxella nonliquefaciens strain FDAARGOS_1006     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 533169..534134 532729..533112 flank 57


Gene organization within MGE regions


Location: 532729..534134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H63_RS02805 (I6H63_02805) pilA/pilA1 532729..533112 (-) 384 WP_320158679.1 pilin Machinery gene
  I6H63_RS02810 (I6H63_02810) - 533169..534134 (-) 966 WP_067008136.1 IS110 family transposase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 12933.49 Da        Isoelectric Point: 7.7797

>NTDB_id=516896 I6H63_RS02805 WP_320158679.1 532729..533112(-) (pilA/pilA1) [Moraxella nonliquefaciens strain FDAARGOS_1006]
MPAYQDYTARAQATEAIKATAGVQSDIGVFVADQNRYPQAAEVAGVAALDGKYFAPGGVTITGGDANTIKKPTTPSVIQV
TFNAGANNGKVVTLTPTATTTGQISGWTCAPGAKDGIDVSRLPKSCQ

Nucleotide


Download         Length: 384 bp        

>NTDB_id=516896 I6H63_RS02805 WP_320158679.1 532729..533112(-) (pilA/pilA1) [Moraxella nonliquefaciens strain FDAARGOS_1006]
TTGCCTGCGTATCAAGACTACACCGCTCGTGCGCAAGCAACCGAAGCCATAAAAGCCACAGCAGGTGTGCAGTCTGACAT
CGGTGTGTTTGTTGCTGACCAAAACCGCTATCCACAAGCAGCAGAAGTTGCAGGGGTTGCTGCCTTAGATGGTAAATACT
TTGCACCAGGTGGTGTTACAATAACAGGTGGTGATGCTAATACAATTAAAAAACCAACCACCCCAAGCGTTATTCAAGTG
ACATTTAATGCTGGTGCTAATAACGGCAAGGTAGTTACCTTGACTCCAACTGCCACTACAACTGGTCAGATCTCAGGATG
GACATGTGCACCTGGTGCAAAAGATGGTATTGATGTGAGTCGTTTGCCTAAGAGCTGTCAGTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(9-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilA1 Eikenella corrodens VA1

56.296

100

0.598