Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   I6G50_RS09590 Genome accession   NZ_CP065691
Coordinates   1912779..1913084 (+) Length   101 a.a.
NCBI ID   WP_197908697.1    Uniprot ID   -
Organism   Lactococcus garvieae strain FDAARGOS_893     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1907779..1918084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G50_RS09570 (I6G50_09565) guaB 1908960..1910441 (+) 1482 WP_003134540.1 IMP dehydrogenase -
  I6G50_RS09575 (I6G50_09570) rpsU 1910567..1910743 (+) 177 WP_003134539.1 30S ribosomal protein S21 -
  I6G50_RS09580 (I6G50_09575) comGA 1910854..1911789 (+) 936 WP_197908696.1 competence type IV pilus ATPase ComGA Machinery gene
  I6G50_RS09585 (I6G50_09580) comGB 1911737..1912756 (+) 1020 WP_269668697.1 competence type IV pilus assembly protein ComGB Machinery gene
  I6G50_RS09590 (I6G50_09585) comYC 1912779..1913084 (+) 306 WP_197908697.1 competence type IV pilus major pilin ComGC Machinery gene
  I6G50_RS09595 (I6G50_09590) comGD 1913059..1913475 (+) 417 WP_042753018.1 competence type IV pilus minor pilin ComGD Machinery gene
  I6G50_RS09600 (I6G50_09595) comGE 1913507..1913740 (+) 234 WP_003134534.1 competence type IV pilus minor pilin ComGE -
  I6G50_RS09605 (I6G50_09600) comGF 1913745..1914155 (+) 411 WP_232252357.1 competence type IV pilus minor pilin ComGF Machinery gene
  I6G50_RS09610 (I6G50_09605) - 1914394..1915239 (+) 846 WP_197908698.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  I6G50_RS09615 (I6G50_09610) - 1915323..1916192 (-) 870 WP_197908699.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11298.28 Da        Isoelectric Point: 10.0744

>NTDB_id=513027 I6G50_RS09590 WP_197908697.1 1912779..1913084(+) (comYC) [Lactococcus garvieae strain FDAARGOS_893]
MKKKVLKSFTLIEMLVVLLIISVLLLLFIPNLAKEKKNIQNTGQSAVVKVVESQAELYQLDKQDGPSLGKLVSDGLITQK
QADSYNDYYAKNPNAKRHVPN

Nucleotide


Download         Length: 306 bp        

>NTDB_id=513027 I6G50_RS09590 WP_197908697.1 1912779..1913084(+) (comYC) [Lactococcus garvieae strain FDAARGOS_893]
ATGAAAAAGAAAGTTCTTAAATCTTTTACTTTGATTGAAATGCTGGTAGTTTTGCTCATTATCAGTGTTCTACTTTTACT
GTTTATTCCAAATTTGGCCAAAGAAAAGAAAAATATTCAAAATACAGGTCAATCTGCAGTTGTCAAGGTTGTAGAAAGCC
AAGCTGAGCTCTATCAATTGGATAAACAAGATGGACCGAGCTTAGGAAAGCTTGTTTCTGACGGTTTGATTACCCAAAAG
CAAGCGGACAGTTACAATGATTACTATGCTAAAAATCCAAATGCCAAGCGTCATGTCCCGAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus mutans UA140

65.347

100

0.653
  comYC Streptococcus mutans UA159

65.347

100

0.653
  comGC/cglC Streptococcus mitis SK321

64.646

98.02

0.634
  comYC Streptococcus gordonii str. Challis substr. CH1

60.784

100

0.614
  comGC/cglC Streptococcus pneumoniae TIGR4

59.596

98.02

0.584
  comGC/cglC Streptococcus pneumoniae R6

59.596

98.02

0.584
  comGC/cglC Streptococcus pneumoniae D39

59.596

98.02

0.584
  comGC/cglC Streptococcus pneumoniae Rx1

59.596

98.02

0.584
  comGC Lactococcus lactis subsp. cremoris KW2

60.417

95.05

0.574
  comGC/cglC Streptococcus mitis NCTC 12261

63.736

90.099

0.574
  comYC Streptococcus suis isolate S10

57.5

79.208

0.455
  comGC Staphylococcus aureus MW2

53.165

78.218

0.416
  comGC Staphylococcus aureus N315

53.165

78.218

0.416
  comGC Bacillus subtilis subsp. subtilis str. 168

40.217

91.089

0.366