Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   I6G50_RS09595 Genome accession   NZ_CP065691
Coordinates   1913059..1913475 (+) Length   138 a.a.
NCBI ID   WP_042753018.1    Uniprot ID   -
Organism   Lactococcus garvieae strain FDAARGOS_893     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1908059..1918475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G50_RS09570 (I6G50_09565) guaB 1908960..1910441 (+) 1482 WP_003134540.1 IMP dehydrogenase -
  I6G50_RS09575 (I6G50_09570) rpsU 1910567..1910743 (+) 177 WP_003134539.1 30S ribosomal protein S21 -
  I6G50_RS09580 (I6G50_09575) comGA 1910854..1911789 (+) 936 WP_197908696.1 competence type IV pilus ATPase ComGA Machinery gene
  I6G50_RS09585 (I6G50_09580) comGB 1911737..1912756 (+) 1020 WP_269668697.1 competence type IV pilus assembly protein ComGB Machinery gene
  I6G50_RS09590 (I6G50_09585) comYC 1912779..1913084 (+) 306 WP_197908697.1 competence type IV pilus major pilin ComGC Machinery gene
  I6G50_RS09595 (I6G50_09590) comGD 1913059..1913475 (+) 417 WP_042753018.1 competence type IV pilus minor pilin ComGD Machinery gene
  I6G50_RS09600 (I6G50_09595) comGE 1913507..1913740 (+) 234 WP_003134534.1 competence type IV pilus minor pilin ComGE -
  I6G50_RS09605 (I6G50_09600) comGF 1913745..1914155 (+) 411 WP_232252357.1 competence type IV pilus minor pilin ComGF Machinery gene
  I6G50_RS09610 (I6G50_09605) - 1914394..1915239 (+) 846 WP_197908698.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  I6G50_RS09615 (I6G50_09610) - 1915323..1916192 (-) 870 WP_197908699.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15657.30 Da        Isoelectric Point: 9.9222

>NTDB_id=513028 I6G50_RS09595 WP_042753018.1 1913059..1913475(+) (comGD) [Lactococcus garvieae strain FDAARGOS_893]
MPSVMSRIKSFTLLESLLVLLICSFVLLLFTGSVKQSIHIVRAEIFVLQFERLYKDTQYIAGLKSQNQTLKSIKGTLSNQ
DEELKVPEGVEINDFSITFDQNAGNSSLQKITIYLPYQKKTISYQLQIGSGKYKKKIS

Nucleotide


Download         Length: 417 bp        

>NTDB_id=513028 I6G50_RS09595 WP_042753018.1 1913059..1913475(+) (comGD) [Lactococcus garvieae strain FDAARGOS_893]
ATGCCAAGCGTCATGTCCCGAATTAAATCCTTTACATTATTAGAAAGTTTGTTAGTTCTTTTGATATGCTCCTTTGTTTT
ATTGCTCTTTACTGGATCGGTTAAACAAAGTATTCATATTGTACGTGCCGAAATTTTTGTATTGCAGTTTGAAAGACTCT
ACAAGGATACGCAGTATATAGCAGGTTTAAAAAGTCAAAACCAAACATTAAAATCAATAAAGGGAACCTTATCCAACCAA
GATGAAGAGCTAAAGGTTCCAGAGGGGGTCGAAATAAATGATTTTTCCATTACTTTTGATCAAAATGCGGGAAATTCGAG
TTTACAAAAAATTACGATTTATCTTCCTTATCAGAAAAAAACGATTTCCTATCAGCTGCAGATTGGAAGTGGGAAGTACA
AGAAAAAAATTTCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

53.623

100

0.536
  comYD Streptococcus mutans UA140

45.455

95.652

0.435
  comYD Streptococcus mutans UA159

45.455

95.652

0.435
  comGD/cglD Streptococcus mitis SK321

44.615

94.203

0.42
  comGD/cglD Streptococcus pneumoniae TIGR4

43.846

94.203

0.413
  comGD/cglD Streptococcus mitis NCTC 12261

42.748

94.928

0.406
  comGD/cglD Streptococcus pneumoniae Rx1

42.308

94.203

0.399
  comGD/cglD Streptococcus pneumoniae D39

42.308

94.203

0.399
  comGD/cglD Streptococcus pneumoniae R6

42.308

94.203

0.399
  comYD Streptococcus gordonii str. Challis substr. CH1

39.695

94.928

0.377