Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   I2434_RS08450 Genome accession   NZ_CP065058
Coordinates   1783445..1783930 (-) Length   161 a.a.
NCBI ID   WP_165628557.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ18     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1778445..1788930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2434_RS08415 (MCPGFBBE_01692) - 1778792..1779553 (-) 762 WP_323126150.1 class I SAM-dependent methyltransferase -
  I2434_RS08420 (MCPGFBBE_01693) rsfS 1779665..1780018 (-) 354 WP_042671284.1 ribosome silencing factor -
  I2434_RS08425 (MCPGFBBE_01694) yqeK 1780020..1780613 (-) 594 WP_012677396.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  I2434_RS08430 (MCPGFBBE_01695) - 1780610..1781242 (-) 633 WP_043026538.1 nicotinate-nucleotide adenylyltransferase -
  I2434_RS08435 (MCPGFBBE_01696) yhbY 1781326..1781634 (-) 309 WP_012516273.1 ribosome assembly RNA-binding protein YhbY -
  I2434_RS08440 (MCPGFBBE_01697) yqeH 1781661..1782779 (-) 1119 WP_111692756.1 ribosome biogenesis GTPase YqeH -
  I2434_RS08445 (MCPGFBBE_01698) - 1782779..1783306 (-) 528 WP_037579990.1 YqeG family HAD IIIA-type phosphatase -
  I2434_RS08450 (MCPGFBBE_01699) comX/sigX/comX2/sigX2 1783445..1783930 (-) 486 WP_165628557.1 competence protein ComX Regulator

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 19387.39 Da        Isoelectric Point: 7.3119

>NTDB_id=506443 I2434_RS08450 WP_165628557.1 1783445..1783930(-) (comX/sigX/comX2/sigX2) [Streptococcus equi subsp. zooepidemicus strain SEZ18]
MSDDLVRLFDKIKPIIMKLRRHYYIQLWELDDWLQEGRLILYRLLVTYPELIEDEEKLYRYFKTKFSSYLKDVLRQQESQ
KRRFHKMAYEEIGSVGHAIPAGGLGVDDYVAYQLIVKEVEEQLTESELLQFRALIRGERFEGRRALLRKIGPYFQDFTGE
K

Nucleotide


Download         Length: 486 bp        

>NTDB_id=506443 I2434_RS08450 WP_165628557.1 1783445..1783930(-) (comX/sigX/comX2/sigX2) [Streptococcus equi subsp. zooepidemicus strain SEZ18]
ATGAGTGATGATTTAGTGAGGTTATTTGATAAGATCAAGCCTATTATTATGAAGCTAAGACGGCATTATTATATTCAGCT
GTGGGAGCTAGATGATTGGTTACAGGAGGGGCGGTTGATCTTGTATCGGTTATTGGTCACTTATCCAGAATTGATAGAGG
ATGAGGAGAAGCTGTATCGTTATTTTAAGACCAAGTTTTCCTCTTATTTGAAGGACGTGTTGCGGCAGCAGGAGAGTCAG
AAGCGTCGGTTTCATAAGATGGCTTATGAGGAGATTGGGTCGGTAGGCCATGCGATACCAGCAGGTGGTTTGGGAGTAGA
TGATTATGTGGCTTATCAGTTGATTGTGAAGGAGGTTGAGGAGCAATTGACAGAGAGCGAGCTGTTACAGTTTCGGGCTT
TGATCAGGGGAGAGCGGTTTGAGGGGAGACGGGCCTTGCTTCGCAAGATAGGACCTTACTTTCAGGACTTTACTGGTGAG
AAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

68.75

99.379

0.683
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

68.75

99.379

0.683
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

68.75

99.379

0.683
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

68.75

99.379

0.683
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

68.75

99.379

0.683
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

68.75

99.379

0.683
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

48.387

96.273

0.466
  comX/sigX Streptococcus mutans UA159

46.497

97.516

0.453
  comX Streptococcus sobrinus strain NIDR 6715-7

45.752

95.031

0.435
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

40.667

93.168

0.379
  comX Streptococcus thermophilus LMD-9

39.216

95.031

0.373
  comX Streptococcus thermophilus LMG 18311

39.216

95.031

0.373
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

39.735

93.789

0.373
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

39.735

93.789

0.373
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

39.333

93.168

0.366
  comX/comX2 Streptococcus pneumoniae Rx1

38.411

93.789

0.36
  comX/comX1 Streptococcus pneumoniae Rx1

38.411

93.789

0.36
  comX/comX2 Streptococcus pneumoniae D39

38.411

93.789

0.36
  comX/comX1 Streptococcus pneumoniae D39

38.411

93.789

0.36
  comX/comX2 Streptococcus pneumoniae R6

38.411

93.789

0.36
  comX/comX1 Streptococcus pneumoniae R6

38.411

93.789

0.36
  comX/comX1 Streptococcus pneumoniae TIGR4

38.411

93.789

0.36
  comX/comX2 Streptococcus pneumoniae TIGR4

38.411

93.789

0.36
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

38.667

93.168

0.36