Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   I2433_RS01575 Genome accession   NZ_CP065056
Coordinates   309484..309963 (+) Length   159 a.a.
NCBI ID   WP_043053421.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ14     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 304484..314963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2433_RS01575 (JDBNIEOD_00305) comX/sigX/comX2/sigX2 309484..309963 (+) 480 WP_043053421.1 hypothetical protein Regulator
  I2433_RS01580 (JDBNIEOD_00306) - 310448..311812 (-) 1365 WP_206152360.1 aspartate kinase -
  I2433_RS01585 (JDBNIEOD_00307) truA 311999..312748 (+) 750 WP_012680115.1 tRNA pseudouridine(38-40) synthase TruA -
  I2433_RS01590 (JDBNIEOD_00308) - 312738..313487 (+) 750 WP_206152361.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  I2433_RS01595 (JDBNIEOD_00309) - 313493..313966 (+) 474 WP_042671321.1 ECF transporter S component -
  I2433_RS01600 (JDBNIEOD_00310) - 313979..314539 (+) 561 WP_206152362.1 TIGR01440 family protein -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 19146.10 Da        Isoelectric Point: 8.2737

>NTDB_id=506347 I2433_RS01575 WP_043053421.1 309484..309963(+) (comX/sigX/comX2/sigX2) [Streptococcus equi subsp. zooepidemicus strain SEZ14]
MTDDLVRLFDKIKPIIMKLRRHYYIQLWELDDWLQEGRLILYRLLVTYPELIEDEEKLYRYFKTKFSSYLKDVLRQQESQ
KRRFHKMAYEEIGSVGHAIPAGGLGVDDYVAYQLIVKEVEERLTESELSQFRALIRGERFEGRRALLRKIGPYFQDFTG

Nucleotide


Download         Length: 480 bp        

>NTDB_id=506347 I2433_RS01575 WP_043053421.1 309484..309963(+) (comX/sigX/comX2/sigX2) [Streptococcus equi subsp. zooepidemicus strain SEZ14]
ATGACTGATGATTTAGTGAGGTTGTTTGATAAGATCAAGCCTATTATTATGAAGCTAAGACGGCATTATTATATTCAGCT
GTGGGAGCTAGATGATTGGTTACAGGAGGGGCGGTTGATCTTGTATCGGTTATTGGTCACTTATCCAGAATTGATAGAGG
ATGAGGAGAAGCTGTATCGTTATTTTAAGACCAAGTTTTCCTCTTATTTGAAGGACGTGTTGCGGCAGCAGGAGAGTCAG
AAGCGTCGGTTTCATAAGATGGCTTATGAGGAGATTGGGTCGGTAGGCCATGCGATACCAGCAGGTGGCTTGGGAGTAGA
TGATTATGTGGCTTATCAGTTGATTGTGAAGGAGGTTGAGGAGCGATTGACAGAGAGTGAGCTGTCGCAGTTTCGGGCTT
TGATCAGGGGAGAGCGGTTTGAGGGGAGACGGGCCTTGCTTCGCAAGATAGGACCTTACTTTCAGGATTTTACTGGCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

68.354

99.371

0.679
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

68.354

99.371

0.679
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

68.354

99.371

0.679
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

68.354

99.371

0.679
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

68.354

99.371

0.679
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

68.354

99.371

0.679
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

47.742

97.484

0.465
  comX/sigX Streptococcus mutans UA159

46.497

98.742

0.459
  comX Streptococcus sobrinus strain NIDR 6715-7

45.752

96.226

0.44
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

40.667

94.34

0.384
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

40.397

94.969

0.384
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

40.397

94.969

0.384
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

39.333

94.34

0.371
  comX/comX2 Streptococcus pneumoniae TIGR4

38.411

94.969

0.365
  comX/comX1 Streptococcus pneumoniae TIGR4

38.411

94.969

0.365
  comX/comX2 Streptococcus pneumoniae Rx1

38.411

94.969

0.365
  comX/comX1 Streptococcus pneumoniae Rx1

38.411

94.969

0.365
  comX/comX2 Streptococcus pneumoniae D39

38.411

94.969

0.365
  comX/comX1 Streptococcus pneumoniae D39

38.411

94.969

0.365
  comX/comX2 Streptococcus pneumoniae R6

38.411

94.969

0.365
  comX/comX1 Streptococcus pneumoniae R6

38.411

94.969

0.365
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

38.667

94.34

0.365
  comX Streptococcus thermophilus LMG 18311

37.908

96.226

0.365
  comX Streptococcus thermophilus LMD-9

37.908

96.226

0.365