Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   IM816_RS04760 Genome accession   NZ_CP063231
Coordinates   1101439..1101882 (-) Length   147 a.a.
NCBI ID   WP_250339984.1    Uniprot ID   -
Organism   Luteibacter flocculans strain EIF3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1096439..1106882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM816_RS04745 (IM816_04750) - 1096928..1098904 (-) 1977 WP_345779961.1 tetratricopeptide repeat protein -
  IM816_RS04750 (IM816_04755) - 1098901..1100847 (-) 1947 WP_250339982.1 hypothetical protein -
  IM816_RS04755 (IM816_04760) pilA2 1100885..1101325 (-) 441 WP_250339983.1 pilin Machinery gene
  IM816_RS04760 (IM816_04765) pilA2 1101439..1101882 (-) 444 WP_250339984.1 pilin Machinery gene
  IM816_RS04765 (IM816_04770) - 1102203..1103453 (-) 1251 WP_250339985.1 glycosyltransferase family 39 protein -
  IM816_RS04770 (IM816_04775) - 1103715..1104623 (+) 909 WP_250339986.1 hypothetical protein -
  IM816_RS04775 (IM816_04780) - 1104724..1106814 (+) 2091 WP_250339987.1 S9 family peptidase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 15428.83 Da        Isoelectric Point: 9.6575

>NTDB_id=493974 IM816_RS04760 WP_250339984.1 1101439..1101882(-) (pilA2) [Luteibacter flocculans strain EIF3]
MKTMQKGFTLIELMIVVAIIAILAAIAIPQYQDYTKRAKVSEGLVLADAAKLAVSETYQAKGAWPKDEAAAGYQTAKSTF
VSSVGIANGVITVTYRNIKDANIDNKTVILTPTATQGSIQWDCNGAAGLGGTSGTIGSKFVPANCRK

Nucleotide


Download         Length: 444 bp        

>NTDB_id=493974 IM816_RS04760 WP_250339984.1 1101439..1101882(-) (pilA2) [Luteibacter flocculans strain EIF3]
ATGAAGACCATGCAGAAGGGCTTTACGCTCATCGAACTGATGATCGTCGTCGCGATCATCGCGATCCTGGCCGCCATCGC
CATCCCGCAGTACCAGGACTACACCAAGCGCGCCAAGGTGTCGGAAGGCCTCGTGCTGGCTGACGCCGCCAAGCTGGCTG
TTTCGGAAACGTATCAGGCTAAAGGCGCTTGGCCGAAGGACGAAGCTGCTGCTGGCTATCAGACGGCGAAGAGCACCTTT
GTTTCAAGCGTAGGCATCGCTAACGGCGTGATCACTGTGACCTACCGGAACATCAAGGATGCCAACATCGACAACAAGAC
GGTCATTCTGACCCCGACCGCCACCCAGGGCTCGATCCAGTGGGATTGCAACGGCGCGGCCGGTCTCGGCGGCACCAGCG
GCACGATTGGCTCGAAGTTCGTCCCGGCCAACTGCCGCAAGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-27)

Pilin (bacterial filament) (Pilin)

(37-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila strain ERS1305867

55.862

98.639

0.551
  pilA2 Legionella pneumophila str. Paris

55.172

98.639

0.544
  pilA Ralstonia pseudosolanacearum GMI1000

41.86

100

0.49
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

36.702

100

0.469
  pilA Haemophilus influenzae 86-028NP

44.444

100

0.463
  pilE Neisseria gonorrhoeae strain FA1090

41.772

100

0.449
  pilE Neisseria gonorrhoeae MS11

40.881

100

0.442
  comP Acinetobacter baylyi ADP1

41.401

100

0.442
  pilA/pilA1 Eikenella corrodens VA1

38.75

100

0.422
  pilA/pilAI Pseudomonas stutzeri DSM 10701

37.584

100

0.381
  pilA Pseudomonas aeruginosa PAK

34.81

100

0.374
  pilA Acinetobacter baumannii strain A118

37.162

100

0.374
  pilA/pilAII Pseudomonas stutzeri DSM 10701

35.762

100

0.367