Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   IM816_RS04755 Genome accession   NZ_CP063231
Coordinates   1100885..1101325 (-) Length   146 a.a.
NCBI ID   WP_250339983.1    Uniprot ID   -
Organism   Luteibacter flocculans strain EIF3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1095885..1106325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM816_RS04745 (IM816_04750) - 1096928..1098904 (-) 1977 WP_345779961.1 tetratricopeptide repeat protein -
  IM816_RS04750 (IM816_04755) - 1098901..1100847 (-) 1947 WP_250339982.1 hypothetical protein -
  IM816_RS04755 (IM816_04760) pilA2 1100885..1101325 (-) 441 WP_250339983.1 pilin Machinery gene
  IM816_RS04760 (IM816_04765) pilA2 1101439..1101882 (-) 444 WP_250339984.1 pilin Machinery gene
  IM816_RS04765 (IM816_04770) - 1102203..1103453 (-) 1251 WP_250339985.1 glycosyltransferase family 39 protein -
  IM816_RS04770 (IM816_04775) - 1103715..1104623 (+) 909 WP_250339986.1 hypothetical protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15195.55 Da        Isoelectric Point: 9.6419

>NTDB_id=493973 IM816_RS04755 WP_250339983.1 1100885..1101325(-) (pilA2) [Luteibacter flocculans strain EIF3]
MKGIKGFTLIELMIVVAIIAILAAIAIPQYQDYTRRAKVSEGLVLADAAKYAVAETYGSRGAFPGTPAEAGYQTGASTYV
SQVIIKNKGVIEVTFRNIDASKVDGKNFTLTPTASGGIITWSCNGAAGFGTPGNLAAKFLPGTCRS

Nucleotide


Download         Length: 441 bp        

>NTDB_id=493973 IM816_RS04755 WP_250339983.1 1100885..1101325(-) (pilA2) [Luteibacter flocculans strain EIF3]
ATGAAGGGGATCAAGGGTTTCACGCTCATCGAACTGATGATCGTGGTGGCGATCATTGCCATCCTGGCGGCCATCGCCAT
CCCGCAATACCAAGACTACACCCGGCGCGCCAAGGTATCGGAGGGGTTGGTTCTCGCTGACGCGGCGAAATACGCCGTCG
CCGAGACGTATGGTTCGCGAGGCGCCTTCCCGGGCACCCCCGCAGAGGCGGGCTACCAGACGGGTGCCAGTACTTACGTG
AGCCAGGTCATCATCAAAAACAAAGGGGTGATCGAGGTCACCTTCCGGAACATCGACGCGAGCAAGGTCGATGGGAAAAA
CTTCACGCTGACGCCCACGGCTTCCGGTGGCATCATCACGTGGAGCTGCAACGGCGCGGCGGGCTTCGGCACACCTGGCA
ATCTTGCAGCTAAATTCCTTCCCGGCACCTGTCGCAGCTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-145)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila str. Paris

51.049

97.945

0.5
  pilA2 Legionella pneumophila strain ERS1305867

51.049

97.945

0.5
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

36.508

100

0.473
  comP Acinetobacter baylyi ADP1

43.949

100

0.473
  pilA Ralstonia pseudosolanacearum GMI1000

39.024

100

0.438
  pilA/pilA1 Eikenella corrodens VA1

38.217

100

0.411
  pilA/pilAI Pseudomonas stutzeri DSM 10701

41.667

98.63

0.411
  pilE Neisseria gonorrhoeae MS11

38.065

100

0.404
  pilE Neisseria gonorrhoeae strain FA1090

38.065

100

0.404
  pilA/pilAII Pseudomonas stutzeri DSM 10701

37.671

100

0.377
  pilA Glaesserella parasuis strain SC1401

36.806

98.63

0.363