Detailed information
Bioinformatically predicted
Overview
| Name | comYC | Type | Machinery gene |
| Locus tag | SSAL_RS00730 | Genome accession | NC_017594 |
| Coordinates | 137522..137836 (+) | Length | 104 a.a. |
| NCBI ID | WP_037611125.1 | Uniprot ID | - |
| Organism | Streptococcus salivarius 57.I | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 132522..142836
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SSAL_RS00715 (Ssal_00141) | - | 135149..135511 (+) | 363 | WP_002887019.1 | DUF1033 family protein | - |
| SSAL_RS00720 (Ssal_00142) | comGA/cglA/cilD | 135590..136531 (+) | 942 | WP_002887018.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| SSAL_RS00725 (Ssal_00143) | comYB | 136413..137513 (+) | 1101 | WP_118172207.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| SSAL_RS00730 (Ssal_00144) | comYC | 137522..137836 (+) | 315 | WP_037611125.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| SSAL_RS00735 (Ssal_00145) | comYD | 137796..138224 (+) | 429 | WP_014632541.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| SSAL_RS00740 (Ssal_00146) | comGE | 138256..138486 (+) | 231 | WP_013991265.1 | competence type IV pilus minor pilin ComGE | - |
| SSAL_RS00745 (Ssal_00147) | comYF | 138473..138910 (+) | 438 | WP_014632542.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| SSAL_RS00750 | comGG | 138888..139205 (+) | 318 | WP_045001363.1 | competence type IV pilus minor pilin ComGG | - |
| SSAL_RS00755 (Ssal_00149) | comYH | 139250..140206 (+) | 957 | WP_014632544.1 | class I SAM-dependent methyltransferase | Machinery gene |
| SSAL_RS00760 (Ssal_00150) | - | 140263..141456 (+) | 1194 | WP_045001366.1 | acetate kinase | - |
| SSAL_RS00765 (Ssal_00151) | - | 141707..141904 (+) | 198 | WP_002885716.1 | helix-turn-helix transcriptional regulator | - |
| SSAL_RS00770 (Ssal_00152) | - | 141916..142572 (+) | 657 | WP_014632546.1 | type II CAAX endopeptidase family protein | - |
Sequence
Protein
Download Length: 104 a.a. Molecular weight: 11428.31 Da Isoelectric Point: 9.7150
>NTDB_id=49375 SSAL_RS00730 WP_037611125.1 137522..137836(+) (comYC) [Streptococcus salivarius 57.I]
MKKLNAVKLRAFTLIEMLVVLLIISILLLLFVPNLSKQKDSVKETGNAAVVKVVDSQAELYEMKNNKTASLAALVSEGQI
TQKQADSYNDYYAKHGGESRSVAN
MKKLNAVKLRAFTLIEMLVVLLIISILLLLFVPNLSKQKDSVKETGNAAVVKVVDSQAELYEMKNNKTASLAALVSEGQI
TQKQADSYNDYYAKHGGESRSVAN
Nucleotide
Download Length: 315 bp
>NTDB_id=49375 SSAL_RS00730 WP_037611125.1 137522..137836(+) (comYC) [Streptococcus salivarius 57.I]
TTGAAAAAATTGAATGCCGTTAAATTACGTGCTTTTACGTTGATTGAAATGCTGGTCGTGCTTCTCATTATCAGTATTCT
CCTTTTGCTCTTTGTACCTAACTTGAGCAAGCAGAAGGATTCTGTTAAAGAGACTGGAAATGCGGCTGTGGTCAAGGTCG
TGGATTCTCAAGCAGAACTTTATGAAATGAAGAATAATAAGACAGCTAGCTTAGCTGCTCTTGTTTCAGAAGGTCAAATC
ACGCAAAAACAGGCAGATTCATACAATGATTATTATGCGAAACATGGTGGCGAAAGCCGCTCAGTGGCCAATTAG
TTGAAAAAATTGAATGCCGTTAAATTACGTGCTTTTACGTTGATTGAAATGCTGGTCGTGCTTCTCATTATCAGTATTCT
CCTTTTGCTCTTTGTACCTAACTTGAGCAAGCAGAAGGATTCTGTTAAAGAGACTGGAAATGCGGCTGTGGTCAAGGTCG
TGGATTCTCAAGCAGAACTTTATGAAATGAAGAATAATAAGACAGCTAGCTTAGCTGCTCTTGTTTCAGAAGGTCAAATC
ACGCAAAAACAGGCAGATTCATACAATGATTATTATGCGAAACATGGTGGCGAAAGCCGCTCAGTGGCCAATTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYC | Streptococcus mutans UA140 |
70.192 |
100 |
0.702 |
| comYC | Streptococcus mutans UA159 |
70.192 |
100 |
0.702 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
64.762 |
100 |
0.654 |
| comGC/cglC | Streptococcus mitis SK321 |
63.636 |
95.192 |
0.606 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
59.406 |
97.115 |
0.577 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
58.416 |
97.115 |
0.567 |
| comGC/cglC | Streptococcus pneumoniae R6 |
59.596 |
95.192 |
0.567 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
59.596 |
95.192 |
0.567 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
59.596 |
95.192 |
0.567 |
| comGC/cglC | Streptococcus pneumoniae D39 |
59.596 |
95.192 |
0.567 |
| comYC | Streptococcus suis isolate S10 |
61.364 |
84.615 |
0.519 |
| comGC | Staphylococcus aureus MW2 |
50 |
75 |
0.375 |
| comGC | Staphylococcus aureus N315 |
50 |
75 |
0.375 |